Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10946 ATGGCTGGGATGAAGTTTGCATTGGTGGCTGTGATGTGCATGGCAGTGATGGTTGCACCCATGGCAGAGGCTGTAATCACATGCGGGCAGGTGACAAGCTCCTTGGCTCCATGCTTAGGTTTCCTTGGAGGTAAGGCTCCTGCTCCATCGACAGCATGCTGCAATGGAGTCAAGGCGCTCAACGGTGCTGCTCAGACCACCCCTGACCGCCAGGCCGCATGCAAGTGCTTGAAATCCGCTGCCGGTTCTATTGTTGGTTTCAATGCCGCATCAAGGCTTGAAGATCGAGGAAGTTGCGGATGCAGACCGGAAAGTACTAGTACTGAGTTTAGTCTCGTAATTAATGATGCTATTGCTATTGAGAATAAGACTGAGAGTGACGAGGGCTCCACCTATCTGTGTGCCCCGCTCTTTCTTGCTGTTTCCTTTGTATGA 435 0.5172 MAGMKFALVAVMCMAVMVAPMAEAVITCGQVTSSLAPCLGFLGGKAPAPSTACCNGVKALNGAAQTTPDRQAACKCLKSAAGSIVGFNAASRLEDRGSCGCRPESTSTEFSLVINDAIAIENKTESDEGSTYLCAPLFLAVSFV. 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10946 144 SMART aai_6 28 99 IPR016140 -
Seca4g10946 144 PRINTS Plant phospholipid transfer protein signature 69 84 IPR000528 GO:0006869|GO:0008289
Seca4g10946 144 PRINTS Plant phospholipid transfer protein signature 27 43 IPR000528 GO:0006869|GO:0008289
Seca4g10946 144 PRINTS Plant phospholipid transfer protein signature 48 62 IPR000528 GO:0006869|GO:0008289
Seca4g10946 144 Pfam Protease inhibitor/seed storage/LTP family 28 81 IPR016140 -
Seca4g10946 144 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 2-RELATED 6 93 IPR000528 GO:0006869|GO:0008289
Seca4g10946 144 Gene3D - 25 113 IPR036312 -
Seca4g10946 144 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 26 103 IPR036312 -
Seca4g10946 144 CDD nsLTP1 26 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10946 Seca-Chr4 247211492 247212202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10946 4 109 Acyl Lipid Metabolism Gene Families AT5G59310 50.442 1.09e-22 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10946 - - atri:130813683 106.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g10946 4 247211492 247212202 Seca4g10809 4 245483777 245486974 PCT