Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0716 ATGGCAAGCATTAAGGTAGCATGTCTGGTTCTGCTGTGCATGATTGTGGTGGGTGCACCCATTGCACAGGCTACCATAACATGTGGACAGGTGGTTAGTGGCCTAACTCCATGCCTCTCTTACCTGCGGACTGGTGGAGCTGTTCCCGGAACATGCTGCAACGGAGTCAAGGGGCTCGTGGCTTCGGCTCAGAGCACCGCTGACAAACAGATAGCGTGTAATTGCCTCAAGTCCCTTGCTGCTTCCACCACATTCAATCCGGAGTATGCAGCTTCACTTCCGGGCAAATGTGGGGTCAACCTCCCTTATAAGATCAGCACCTCCACCAACTGCAATACTATCAAGTTCTGA 351 0.5242 MASIKVACLVLLCMIVVGAPIAQATITCGQVVSGLTPCLSYLRTGGAVPGTCCNGVKGLVASAQSTADKQIACNCLKSLAASTTFNPEYAASLPGKCGVNLPYKISTSTNCNTIKF* 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0716 116 ProSitePatterns Plant lipid transfer proteins signature. 93 114 IPR000528 GO:0006869|GO:0008289
Lan1g0716 116 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 1 113 - -
Lan1g0716 116 PANTHER - 1 113 IPR000528 GO:0006869|GO:0008289
Lan1g0716 116 Pfam Protease inhibitor/seed storage/LTP family 28 111 IPR016140 -
Lan1g0716 116 PRINTS Plant phospholipid transfer protein signature 27 43 IPR000528 GO:0006869|GO:0008289
Lan1g0716 116 PRINTS Plant phospholipid transfer protein signature 47 61 IPR000528 GO:0006869|GO:0008289
Lan1g0716 116 PRINTS Plant phospholipid transfer protein signature 68 83 IPR000528 GO:0006869|GO:0008289
Lan1g0716 116 PRINTS Plant phospholipid transfer protein signature 84 101 IPR000528 GO:0006869|GO:0008289
Lan1g0716 116 PRINTS Plant phospholipid transfer protein signature 102 113 IPR000528 GO:0006869|GO:0008289
Lan1g0716 116 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 26 114 IPR036312 -
Lan1g0716 116 SMART aai_6 28 111 IPR016140 -
Lan1g0716 116 Gene3D - 25 115 IPR036312 -
Lan1g0716 116 CDD nsLTP1 26 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0716 Lan-Chr1 16322797 16323820 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0716 8 115 Acyl Lipid Metabolism Gene Families AT5G59310 56.481 1.40e-32 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0716 - - gmx:100815185 149.828
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0178 12 2625293 2628032 Lan1g0716 1 16322797 16323820 LSH
Lan1g0716 1 16322797 16323820 Lan11g1768 11 34336188 34336919 PCT