Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2496 ATGAGCCATGGGGAGCATGTAGCAGCGGTGCACACTGCTACTAACGCTTTGCAAGCATTAGGGAGGGGCTTTGATGTGAACTTTGATACGAGGTTGCTTTATTGTAAAGGAGTTTCGGGGTCTAGGGTAGTTGAGATTGATGAAGAACACCGTAGGGAGCTGTGGTTGTACGAGGATGTGGCTGTTCCCGATGTTTCCAGGGACATTGGAAGCTCTCCAGAGCCTATGGTGCGTCAGAGTTCTGGGGTCCGCAGTTTCCAAGAGATGGTGGAATACTTTAACGAAAGGGCAAATATATCAGGGAGCTTTGCTCTTGGGAGCTTTAACTCTGCATTTAGCTTCACCGGTTCAAAACATGTTGATGCTGCTGCCACAAAAACCTTGTCTTCAGATGGGTTTTACATTCCTCTTGCAAAGGTTCAGCTTAAAAAATCCCATTTAATGTTGCAAGAAAATGTCAAAAGGGCTGTCCCAGTCTATTGGGACCCGCCATCCTTGGCAAGttttattgaaaattttgggACTCATGTCATTACATCAATAACTATTGGTGGTAAAGATGTTATTTATGTTAAACAACACCATACTTCTCCTTTGTCAAAGTTGGAGATGAAAAACTATATTCAGGATATTGGAAATCAGAGGTTCTCTGACATCAATAGCCATACAAGTTCAGGTCAAATAAAATCGAAGGATAAGGGTGTTGATCCATTTTCATTCAATAGTCAAGGCGTTTATCCCCAACCCACGACTGCAACATATCCTACCGGGAAAGAaGATGTCACAGTCATTTttagaagaagaggaggagatGATTTGGAACAAAACCACAGTAAATGGTTAAAAACTGTGAAGTCCTCCCCAGATATCATTGAGATGTCTTTCTGTCCTATAACTGATCTCCTTGATGATATACCTGCCAAGGAGCATTTGACTCGTGCCATTGGTCTTTATCTTGAATATAAACCTCCAATTGAAGAACTTAGATATTTCCTAGAGTTTCAGATTCCTTGTGTATGGGCTCCTTTACAGGACAGGATTCCTGGTCAACAAAGGAAGGAACCTGTGTGCCCATCTTTGCAATTCAGCATAATGGGCCAGAAACTTTACGTCAGTCAAGAACAGATTACAGTTGGACGTAGGCCAGTAACTGGCTTACGTCTTTGTCTAGAAGGAAGCAAGCAGAATCGGCTGAGTGTTCACGTTCAACACTTGGTATCCCTTCCGAAAATCCTTCATCCATATTGGGACAGCCACGTGGCTATAGGCGCTCCCAAGTGGCAGGGACCCGAGGAGCAAGACAGTCGGTGGTTTGAGCCTGTTAAGTGGAAGAATTTTTCTCATGTGAGTACGGCGCCAATTGAGAACCCTGAAACCTTCATAGGAGACTTCTCTGGTGTCTACATAGTTACTGGAGCACAGCTTGGAGTGTGGGATTTCGGATCACGGAATGTATTGTACATGAAGCTCTTATATTCAAGGTTACCTGGCTGCACGATCCGACGGTCTCTGTGGGATCACGTCCCAAACAAGTCGCCAAAAACTGTGAACGCTGGAAACACCTCCAACCCAGATAACTCAACCCTTGGTTCTAGAGAAAGTGCCACAGGGAACAAGTTGGTGAAGTATGTTGACTTGTCTGAGATGAGCAAAGGACCCCAAGATCCCCCTGGCCATTGGTTAGTCACTGGTGGAAAGCTTGGTgttgaaaaagggaaaattgtTTTGAGAGTGAAGTATTCATTGCTTAATTACTGA 1758 0.4306 MSHGEHVAAVHTATNALQALGRGFDVNFDTRLLYCKGVSGSRVVEIDEEHRRELWLYEDVAVPDVSRDIGSSPEPMVRQSSGVRSFQEMVEYFNERANISGSFALGSFNSAFSFTGSKHVDAAATKTLSSDGFYIPLAKVQLKKSHLMLQENVKRAVPVYWDPPSLASFIENFGTHVITSITIGGKDVIYVKQHHTSPLSKLEMKNYIQDIGNQRFSDINSHTSSGQIKSKDKGVDPFSFNSQGVYPQPTTATYPTGKEDVTVIFRRRGGDDLEQNHSKWLKTVKSSPDIIEMSFCPITDLLDDIPAKEHLTRAIGLYLEYKPPIEELRYFLEFQIPCVWAPLQDRIPGQQRKEPVCPSLQFSIMGQKLYVSQEQITVGRRPVTGLRLCLEGSKQNRLSVHVQHLVSLPKILHPYWDSHVAIGAPKWQGPEEQDSRWFEPVKWKNFSHVSTAPIENPETFIGDFSGVYIVTGAQLGVWDFGSRNVLYMKLLYSRLPGCTIRRSLWDHVPNKSPKTVNAGNTSNPDNSTLGSRESATGNKLVKYVDLSEMSKGPQDPPGHWLVTGGKLGVEKGKIVLRVKYSLLNY 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2496 585 MobiDBLite consensus disorder prediction 513 533 - -
Ssu4g2496 585 Pfam MAC/Perforin domain 106 318 IPR020864 -
Ssu4g2496 585 PANTHER MACPF DOMAIN-CONTAINING PROTEIN CAD1 8 585 IPR044663 GO:0006952|GO:0012501|GO:2000031
Ssu4g2496 585 SMART MACPF_8 125 320 IPR020864 -
Ssu4g2496 585 ProSiteProfiles Membrane attack complex/perforin (MACPF) domain profile. 3 332 IPR020864 -
Ssu4g2496 585 PANTHER MACPF DOMAIN-CONTAINING PROTEIN CAD1-LIKE 8 585 - -
Ssu4g2496 585 MobiDBLite consensus disorder prediction 511 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2496 Ssu-Chr4 62986452 62992260 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2496 - - gmx:100817248 1113.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2496 4 62986452 62992260 Ssu4g2496 4 62986452 62992260 ECH