Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2500 ATGGCCAGCATTAGGGTTACATGCGTTGTTCTTATGGTGTGCATGGCATTGTTGAGTGCACCGATGGTCCACGGTGCCATCTCATGTGGCACCGTGACCGTTTCCTTGGCACCTTGCCTCGCATACCTGCAGCGCGGGGGAGCCCCGCCACTGGCATGTTGCCAAGGGGTCAAGAATGTCCTTGCCGGTGCCAGGACTCCCGCCGACCGCAAGACCGTGTGCACTTGCCTTAAAACATCGGCCGGTCAAGTCCCCGGCATTAATCTTGCCAATGCTGGCTCACTCCCTTCCAAATGTGGTGTTAACATCCCATACAAGATTAGCCCCTCCACCAACTGCAATACCATCAATTAA 354 0.5537 MASIRVTCVVLMVCMALLSAPMVHGAISCGTVTVSLAPCLAYLQRGGAPPLACCQGVKNVLAGARTPADRKTVCTCLKTSAGQVPGINLANAGSLPSKCGVNIPYKISPSTNCNTIN* 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2500 117 Gene3D - 26 117 IPR036312 -
Amo12g2500 117 CDD nsLTP1 27 114 - -
Amo12g2500 117 ProSitePatterns Plant lipid transfer proteins signature. 95 116 IPR000528 GO:0006869|GO:0008289
Amo12g2500 117 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 29 - -
Amo12g2500 117 PRINTS Plant phospholipid transfer protein signature 28 44 IPR000528 GO:0006869|GO:0008289
Amo12g2500 117 PRINTS Plant phospholipid transfer protein signature 48 62 IPR000528 GO:0006869|GO:0008289
Amo12g2500 117 PRINTS Plant phospholipid transfer protein signature 69 84 IPR000528 GO:0006869|GO:0008289
Amo12g2500 117 PRINTS Plant phospholipid transfer protein signature 86 103 IPR000528 GO:0006869|GO:0008289
Amo12g2500 117 PRINTS Plant phospholipid transfer protein signature 104 115 IPR000528 GO:0006869|GO:0008289
Amo12g2500 117 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 27 116 IPR036312 -
Amo12g2500 117 PANTHER - 4 114 IPR000528 GO:0006869|GO:0008289
Amo12g2500 117 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 1-RELATED 4 114 - -
Amo12g2500 117 SMART aai_6 29 113 IPR016140 -
Amo12g2500 117 Pfam Protease inhibitor/seed storage/LTP family 29 113 IPR016140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2500 Amo-Chr12 108293769 108295464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2500 6 117 Acyl Lipid Metabolism Gene Families AT5G59320 50.000 5.01e-30 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2500 - - gmx:100306510 147.517
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2500 12 108293769 108295464 Amo12g2500 12 108293769 108295464 ECH