Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01440 ATGGCCAGCATGAAGTGTGCGTGCGTCGTTGCCCTGCTGTGCTTGGTGGTTGCCACGGCACCCACGGCACATGCCATCACGTGCGGCCAGGTCACCACTTCCCTGGCTTCATGCATCAATTTCCTGAAGAACGGTGGGCAGGTGCCGCCGTCATGCTGCGCCGGAGTGAAGTCCCTCAACTCCGCCGCAAAGACCACCCCCGACCGCCAGGCCGTCTGCAACTGCCTCAAAAGCGCCGCCGCCAGCATCTCTGGATTCAATGCTAACAACGCAGCCATACTCCCGGGCAAGTGTGGCGTCAGCATCCCCTACAAGATCAGCACCTCCACCAACTGCGCCACTATCAAGTTTTGA 354 0.6045 MASMKCACVVALLCLVVATAPTAHAITCGQVTTSLASCINFLKNGGQVPPSCCAGVKSLNSAAKTTPDRQAVCNCLKSAAASISGFNANNAAILPGKCGVSIPYKISTSTNCATIKF 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01440 117 CDD nsLTP1 26 112 - -
Viun10g01440 117 PRINTS Plant phospholipid transfer protein signature 47 61 IPR000528 GO:0006869|GO:0008289
Viun10g01440 117 PRINTS Plant phospholipid transfer protein signature 85 102 IPR000528 GO:0006869|GO:0008289
Viun10g01440 117 PRINTS Plant phospholipid transfer protein signature 103 114 IPR000528 GO:0006869|GO:0008289
Viun10g01440 117 PRINTS Plant phospholipid transfer protein signature 68 83 IPR000528 GO:0006869|GO:0008289
Viun10g01440 117 PRINTS Plant phospholipid transfer protein signature 27 43 IPR000528 GO:0006869|GO:0008289
Viun10g01440 117 ProSitePatterns Plant lipid transfer proteins signature. 94 115 IPR000528 GO:0006869|GO:0008289
Viun10g01440 117 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 26 114 IPR036312 -
Viun10g01440 117 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 2-RELATED 5 113 IPR000528 GO:0006869|GO:0008289
Viun10g01440 117 Gene3D - 25 116 IPR036312 -
Viun10g01440 117 SMART aai_6 28 112 IPR016140 -
Viun10g01440 117 Pfam Protease inhibitor/seed storage/LTP family 28 112 IPR016140 -
Viun10g01440 117 FunFam Non-specific lipid-transfer protein 25 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01440 Viun-Chr10 28764343 28765162 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g01440 8 116 Acyl Lipid Metabolism Gene Families AT5G59320 61.468 1.25e-38 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01440 - - gmx:100306510 173.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g01440 10 28764343 28765162 Viun5g01302 5 9522048 9525662 PCT