Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g01439 ATGGGGGAGCATGTAGCAGCGGTGCACACTGCTACTAACGCTTTGCAAGCATTAGGGAGGGGTTTTGATGTGAATTTTGATACGAGGTTGCTCTATTGTAAAGGAATTTCAGGGTCTAGGGTAGTTGAAATTGATGAAGAACACCGTAGAGAACTGTTGTTGTACGATGATGTGGCTGTTCCTGACGTTTCCAGGGACATTGGAAGCTCCCAGGAGACCATGGAGCGTCAGAGTTCTGGGGTGTGCACGTTTCCTGAGATGGTGGAATACTTTAATGGAAGGGCAAATATATCAGGGAACTTTCCTCTTGGGAGTTTTAATGCTGCATTTAGCTTCACTGGTTCAAAACATGTTGATGCTGCAGCCACAAAAACCTTGTCTACAGAAGGATTTTATATTCCTCTTGCAAAGGTTCAGCTTAAAAAATCCCACTTAACGTTGCAAGGAAATGTCAAAAAGGCTGTCCCATTCAATTGGGACCCACCGGCCTTGGCAAGTTTTATCGAAAATTTTGGGACTCATGTCATTACATCTATAACTATTGGTGGTAAAGATGTTATTTATGTTAAACAACACCATACTTCTCCTTTGTCAAAGTTGGAGATGAAAAATTATATTCAGGATATTGGAAATCAGAGGTTCTCTGACATCAATAGTCAAACAAGTGCAGGTCAAACAAAATCCAAGGATAAGGGTGTTGATCCGTTTTCATTCAATAGTCAAGGGGTTTACCCCCAACCTACAACTGCAACATATCCTTCTGGGAAAGAAGATGTTACAGTCATTTTTAGAAGAAGAGGAGGAGATGATTTAGAACAGAACCACAGGAAATGGCTATCAACTGTGAAGTCCTCCCCAGATATCATTGAGATGACTTTCTGTCCTATAACTGCTCTACTTGATGAAATACCTGCCAAGGAGCATTTGACTCGTGCCATTGGTCTTTATCTTGAATTTAAACCTCCAATTGAAGAACTTAGATATTTCCTGGAGTTTCAGATTCCTCGTGTATGGGCTCCTTTACAAGACAGGATTCTTGGTCAGCAAAGAAAGGAACCCGTGTGTCCATCTTTGCAATTCAGCATAATGGGCCAGAAACTTTACATCAGTCAAGAACAGATTACAGTGGGACGAAGGCCGGTAACCGGACTACGTCTCTGTCTAGAAGGAAGCAAGCAGAATCGGCTGAGCATTCTGGTTCAACACTTGGTATCCCTTCCAAAAATCCTTCATCCATATTGGGACAGCCATGTTGCTATAGGTGCTCCCAAGTGGCAGGGACCCGAGGAACAAGACAGCAGATGGTTTGAACCAGTTAAATGGAAGAACTTTTCTCATGTGAGCACTGCACCAATTGAGAACCCTGAAACCTTCATAGGAGACTTCTCTGGTGTCCACATAGTTACTGGAGCTCAGCTTGGAGTGTGGGATTTTGGATCACGGAATGTGTTGTACATGAAGCTCTTATATTCAAGGTTACCCGGTTGCACGATTCGAAGATCGCTGTGGGATCATGCCGGAAACAGTTCGTCAAAAACAGTGAATGTTGGAACCACCTCCAACTCAGATAACTCAATTGTGGGAGAAAAGGCCACAGGGAACAAGTTGGTGAAGTATGTTGACATGTCTGCAATGACCAAAGAGCCCCAAGACCCTCCTGGCCATTGGCTTGTCACTGGTGGAAAGCTTGGTGTGGAAAAAGGGAAAATTGTTTTGAGAGTGAAATATTCATTGCTTAATTACTGA 1746 0.4313 MGEHVAAVHTATNALQALGRGFDVNFDTRLLYCKGISGSRVVEIDEEHRRELLLYDDVAVPDVSRDIGSSQETMERQSSGVCTFPEMVEYFNGRANISGNFPLGSFNAAFSFTGSKHVDAAATKTLSTEGFYIPLAKVQLKKSHLTLQGNVKKAVPFNWDPPALASFIENFGTHVITSITIGGKDVIYVKQHHTSPLSKLEMKNYIQDIGNQRFSDINSQTSAGQTKSKDKGVDPFSFNSQGVYPQPTTATYPSGKEDVTVIFRRRGGDDLEQNHRKWLSTVKSSPDIIEMTFCPITALLDEIPAKEHLTRAIGLYLEFKPPIEELRYFLEFQIPRVWAPLQDRILGQQRKEPVCPSLQFSIMGQKLYISQEQITVGRRPVTGLRLCLEGSKQNRLSILVQHLVSLPKILHPYWDSHVAIGAPKWQGPEEQDSRWFEPVKWKNFSHVSTAPIENPETFIGDFSGVHIVTGAQLGVWDFGSRNVLYMKLLYSRLPGCTIRRSLWDHAGNSSSKTVNVGTTSNSDNSIVGEKATGNKLVKYVDMSAMTKEPQDPPGHWLVTGGKLGVEKGKIVLRVKYSLLNY 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g01439 581 ProSiteProfiles Membrane attack complex/perforin (MACPF) domain profile. 1 330 IPR020864 -
Viun10g01439 581 SMART MACPF_8 123 318 IPR020864 -
Viun10g01439 581 Pfam MAC/Perforin domain 104 316 IPR020864 -
Viun10g01439 581 PANTHER MACPF DOMAIN-CONTAINING PROTEIN CAD1 5 581 IPR044663 GO:0006952|GO:0012501|GO:2000031
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g01439 Viun-Chr10 28725886 28732345 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g01439 - - gmx:100817248 1072