Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00960 GTGGGAGGAGACTATGAGGGGAATAGAATGAGAACCATAGAAGATGGAGAAAGAGAAAGAGCTTATTGTTGCAACTGTGGCATATTCATTCAAGGTCTTCTTCAACGTCTTCATCACCTTCTCACTGCGCTTAGTCTTTCTATTTCTGCTTCTGAGTTGAAAGAAGAGTTGCAGTCTCTTGCAAAGGTTGCAAGTCCTATAATAATGACTAGCCTGATGATGTACTCTCGATCTGCTGTGTCCATGTTGTTCTTGGGACGCCAAGGGAAAGTAGAGCTTGCAGGAGGCTCACTAGCACTTGGATTTGCCAACATAACTGCGAATTCAGTTCTCAAAGGCCTCACAATGGGAATGGACCCAATTTGTTGCCAAGCTTTTGGAGCAAAGAGATGGTCAGTTCTCAACCAAACCTTTTTCAGAACTATATGTCTCCTCCTACTTGTTGCCATACCCATTTCAATTTTATGGCTAAACATGGAACCAATCCTTCAAATGCTAGGTCAAGACCCTGAAGTCACAAAAGTTGCCCAAGTTTACATGGTCTTCTCTATTCCAGAGTTGCTAGCACAGGCTCATCTTAATCCATTGAGATCTTTCTTAAGAACCCAAGGCTTAACCACCCCAGTCACTGTAGCTGCATCTTGTGCGGCACTATTGCACCTTCCCATCAACTATTTCTTGGCCACATACTTGAACTTAGGGGTAAAGGGTATTGCATTAGCCACTGGTTTGAACTCTATAAACATGACTTTAGGCTTGCTGCTCTATGTTTTCTTCTCAAACAAACCACTGAAACCCTGGCAAGGAGCTACTATTCTCTCAGCCTTTCATGGGTGGAAACCACTGCTGAGTTTGGCATTGCCTAGTTGCATTTCAGTGTGCTTGGAGTGGTGGTGGTATGAGATAATGCTCTTTCTGTGTGGGTTGTTAAGCAATCCACAAGCTACTGTTGCTACCATGGGGATCCTTATTCAAACACTTGGATTCTTGTATGTGTTTCCGTTTTCGATTAGTATAGCCTTGACAACAAGAATTGGTCACTCGTTAGGTGCAGGACAAGCATCCAAGGCACAAAGTACTGCCATAATTGGGTTCATGACAGCATTTACTTTGGGGATCACCACCTTCATTTTGTTGTTTTTTGTGAGGAAATCATGGGGGAAACTTTTCACTGATGAGATACAAATTCTTGATCTGGTCACAACTATACTTCCCATTCTTGGGCTGTGTGAGATTAGCAATTGGCCTCAAACAGTTTCATGTGGGATTTTGTCAGGGACTGCTAGGCCTTATTTGGGTGCTAGAATAAACTTGTGTGCATTTTATCTGGTGGGGTTGCCAGTTTCTGTTTTTGCTTCTTTCGTGTACAAGTATGAATTGGTGGGTTTGTGGTCTGGAATGGTTGCTGCACAGGCTTCTTGTCTTTGCCTGATGGTGTACACATTGATTCAAACAGATTGGGGGCAGCAATGTAAGAGGGCAGTGGAACTGGCTCAGAAAACAACAGATCAGGAAAATAAAAATGATGAGGAAAGTGGGTTACTTGGTTCTGATCAATAA 1560 0.4301 VGGDYEGNRMRTIEDGERERAYCCNCGIFIQGLLQRLHHLLTALSLSISASELKEELQSLAKVASPIIMTSLMMYSRSAVSMLFLGRQGKVELAGGSLALGFANITANSVLKGLTMGMDPICCQAFGAKRWSVLNQTFFRTICLLLLVAIPISILWLNMEPILQMLGQDPEVTKVAQVYMVFSIPELLAQAHLNPLRSFLRTQGLTTPVTVAASCAALLHLPINYFLATYLNLGVKGIALATGLNSINMTLGLLLYVFFSNKPLKPWQGATILSAFHGWKPLLSLALPSCISVCLEWWWYEIMLFLCGLLSNPQATVATMGILIQTLGFLYVFPFSISIALTTRIGHSLGAGQASKAQSTAIIGFMTAFTLGITTFILLFFVRKSWGKLFTDEIQILDLVTTILPILGLCEISNWPQTVSCGILSGTARPYLGARINLCAFYLVGLPVSVFASFVYKYELVGLWSGMVAAQASCLCLMVYTLIQTDWGQQCKRAVELAQKTTDQENKNDEESGLLGSDQ 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00960 519 Pfam MatE 288 450 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu9g00960 519 Pfam MatE 66 226 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu9g00960 519 PANTHER MULTIDRUG RESISTANCE PROTEIN 52 487 - -
Vimu9g00960 519 CDD MATE_eukaryotic 56 493 IPR045069 GO:0042910|GO:1990961
Vimu9g00960 519 NCBIfam MATE family efflux transporter 66 464 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00960 Vimu-Chr9 16113923 16119144 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00960 K03327 - gmx:106798137 928.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00168 6 2287564 2290129 Vimu9g00960 9 16113923 16119144 PCT