Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05029 ATGCAGATAAAAGAAGAGTTGAAAGCACTCGCAAAGATTGCAGGTCCGATAACAATGACAAACCTAATGATGCATTCTCGATCGGCAATCTCAATGTTATTCCTTGGTCGTCAGGGAAGAGCAGAGCTAGCTGGGGGTTGCCTAGCCCTCGGTTTCGCCAACATCACCGCAACTTCAGTTCTCAAAGGTCTAACAATGGGAATGGATCCAATTTGTTGTCAAGCATATGGAGCCAAAAGATGGTCAGTTCTAAACCAAGCACTTTTGAAAACACTATGTCTCCTCCTACTTGTTACAATCCCAATTACACTTTTATGGCTTAACATGGAACCACTACTTCAATTACTAGGTCAAGACCCTAGTGTCACAAAAGTTGCACAAATTTACATGCTATACTCAATTCCTGAATTATTTGCTCAAGCATTTCTCAATCCATTAAGAACTTTTTTAAGAACTCAAGGCTTAACAGCACCAATTACTATGGCTGCATCATTTGCAGCACTATTACACCTACCAATAAATTATTTTCTAGCTACTTATTTGAAATTAGGTGTAAAAGGTATTGCATTAGCCACCGGAATGAACTCAATAAACATGACATTAGGAATGTTGGTTTATATTGTTTTTTCAAATAAACCACTTAAGCCATGGCAAGGTGTTAGAATATTTGGCTCTATTTCTCATGGATGGAAACCGTTGCTTGGTCTTGCAATTCCTAGTTGTCTTTCAGTTTGTTTAGAATGGTGGTGGTATGAGATAATGCTTTTTCTTTGTGGTTTGTTGAGTGATCCTCAAACTTCAGTTTCAACAATGGGAATACTTATTCAAACACTTGGTTTTCTTTATGTGTTTCCGTATTCACTTAGTGCATCTTTGACAATGAGAATTGGTCATTCGTTAGGGTCAGGAGAAGCCTCACGTGCAAAAGGAATCGCTATAATTGGAATTTTGATAGCAGTTTTACTTGGGATTTTGGCTTTTGTTGGACTAATTTTAGCAAGAAAAAATTGGGGGAGATTATTTACGGACGAGGTACAAATTATTGATATGATAAGAAAAGTACTTCCAATTTTAGGGTTATCTGAAATTAGCAATTGGCCACAAACGGTATCATGTGGGATTTTAGCTGGAACCGCACGTCCTTATGTTGGTGCTAGAATTAACTTGTGCGCATTTTATTTAGTTGGGTTACCAGTTTCAATTTTTGCTAGTTTTGTGTACAAATTTGAATTGGTAGGTTTGTGGTATGGAATGTTGGTAGCACAAGTTTCATGTGTTTGTATGATGGTGTATACTTTGGTTCAAACTGATTGGGGACAACAAACTAAAAGAGCCTTGGAGTTGGCTCAAAAATCAACACAACAAGAAAGTGTCATTGATGAAGAAAGTGTGTTGCTTGATTCTCTCTAA 1410 0.3745 MQIKEELKALAKIAGPITMTNLMMHSRSAISMLFLGRQGRAELAGGCLALGFANITATSVLKGLTMGMDPICCQAYGAKRWSVLNQALLKTLCLLLLVTIPITLLWLNMEPLLQLLGQDPSVTKVAQIYMLYSIPELFAQAFLNPLRTFLRTQGLTAPITMAASFAALLHLPINYFLATYLKLGVKGIALATGMNSINMTLGMLVYIVFSNKPLKPWQGVRIFGSISHGWKPLLGLAIPSCLSVCLEWWWYEIMLFLCGLLSDPQTSVSTMGILIQTLGFLYVFPYSLSASLTMRIGHSLGSGEASRAKGIAIIGILIAVLLGILAFVGLILARKNWGRLFTDEVQIIDMIRKVLPILGLSEISNWPQTVSCGILAGTARPYVGARINLCAFYLVGLPVSIFASFVYKFELVGLWYGMLVAQVSCVCMMVYTLVQTDWGQQTKRALELAQKSTQQESVIDEESVLLDSL 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05029 469 CDD MATE_eukaryotic 6 444 IPR045069 GO:0042910|GO:1990961
Vifa2g05029 469 Pfam MatE 239 400 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa2g05029 469 Pfam MatE 16 176 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa2g05029 469 NCBIfam MATE family efflux transporter 16 415 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vifa2g05029 469 PANTHER MULTIDRUG RESISTANCE PROTEIN 3 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05029 Vifa-Chr2 1494945121 1494946530 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05029 K03327 - gmx:106798137 714.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g05029 2 1494945121 1494946530 Vifa2g05029 2 1494945121 1494946530 PCT