Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g2213 ATGGCAAGCCTCAAGTTTGCATTTGTGATGCTTGTGTGCATGGCCATGGTGGGAGCACCAATGGTGAATGCCATATCATGTGGCCAAGTGAACAGTGCCCTAGCACCATGCATCCCTTTCCTCACAAAGGGTGGAGCTCCTCCTCCGGCTTGTTGCAGCGGAGTTAGAGGCCTTCTCGGTGCTTTAAGAACCACCGCAGACCGCCAGGCCGCCTGTAACTGCCTCAAAGCCGCTGCCGGTTCCCTTCGTGGCCTCAACCAAGGCAACGCCGCCGCCCTCCCTGGAAGATGCGGTGTCAGCATTCCTTACAAGATCAGCACCTCCACCAACTGTGCTACCATTAAGTTCTGA 351 0.5613 MASLKFAFVMLVCMAMVGAPMVNAISCGQVNSALAPCIPFLTKGGAPPPACCSGVRGLLGALRTTADRQAACNCLKAAAGSLRGLNQGNAAALPGRCGVSIPYKISTSTNCATIKF* 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g2213 116 ProSitePatterns Plant lipid transfer proteins signature. 93 114 IPR000528 GO:0006869|GO:0008289
Ahy12g2213 116 PANTHER - 1 113 IPR000528 GO:0006869|GO:0008289
Ahy12g2213 116 Gene3D - 24 116 IPR036312 -
Ahy12g2213 116 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 24 114 IPR036312 -
Ahy12g2213 116 CDD nsLTP1 25 111 - -
Ahy12g2213 116 Pfam Protease inhibitor/seed storage/LTP family 27 111 IPR016140 -
Ahy12g2213 116 SMART aai_6 27 111 IPR016140 -
Ahy12g2213 116 PRINTS Plant phospholipid transfer protein signature 102 113 IPR000528 GO:0006869|GO:0008289
Ahy12g2213 116 PRINTS Plant phospholipid transfer protein signature 26 42 IPR000528 GO:0006869|GO:0008289
Ahy12g2213 116 PRINTS Plant phospholipid transfer protein signature 84 101 IPR000528 GO:0006869|GO:0008289
Ahy12g2213 116 PRINTS Plant phospholipid transfer protein signature 67 82 IPR000528 GO:0006869|GO:0008289
Ahy12g2213 116 PRINTS Plant phospholipid transfer protein signature 46 60 IPR000528 GO:0006869|GO:0008289
Ahy12g2213 116 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 1 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g2213 Ahy-Chr12 108419342 108420835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g2213 4 115 Acyl Lipid Metabolism Gene Families AT2G38540 55.263 1.40e-35 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g2213 - - gmx:100306510 150.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g2213 12 108419342 108420835 Ahy2g1922 2 93167864 93169391 hybridization