Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2494 ATGTGCACCGGTGCTGAATCTCGAGGAAATATAAATGGTGAGGTTGTGATTTCAAAGGTGGGAGGAGACTATGAGGATAGAATGAGAAACttagaaggagaagaaagagcTTGCAAGTGTGGCACATTCATTCAAGGCCTTCTTCAACGCATACATCATCATCTCACTGCCCTTAATCTCCCTAGCATTCCTGCTTCAGAGTTGAAAGAAGAGTTGCAATCGCTTGCAAAGATTTCATGTCCCATAATAACGACTAGCCTAATGTTGTACTCTCGATCTGCTGTCTCCATGTTGTTTTTGGGTCGCCAAGGGAAAGTAGAGCTAGCTGGAGGCTCCCTAGCCCTTGGGTTTGCCAACATCACTGCTAATTCAGTCCTCAAAGGCCTCACAATGGGAATGGACCCAATTTGTTGCCAAGCATATGGAGCCAAGAGATGGTCAGTTCTCAACCAAACCTTTTTAAGAACTCTATGTCTCCTCCTACTTGTTGCCATACCCATTTCAATTTTATGGCTAAATATGGAACCCATCCTTCAAATGCTAGGTCAAGACCCTGAAGTCACAAAAGTTGCCCAAGTTTACATGGTCTTCTCTATTCCAGAGTTGCTAGCTCAGGCTCATCTTAATCCATTGAGGACCTTCCTAAGAACCCAAGGTTTAACCACCCCAGTAACTATAGCAGCATCTTGTGCAGCACTGTTGCACCTTCCCATCAACTATTTCTTGGCCACATACTTAAACTTAGGGGTAAAGGGTATTGCATTAGCCACTGGTTTGAATTCAATAAACATGACTTTAGGCTTGTtgctttatcttttcttctcaAAGAAACCACTAAAACCTTGGCAAGGAGCTACAATTCTCTCAGCCTTTCATGGGTGGAGACCATTGCTAAGTTTGGCATTGCCTAGTTGCATTTCAGTGTGCTTGGAGTGGTGGTGGTATGAGATAATGCTCTTTCTATGTGGTTTGTTAAGCAATCCGCAAGCCACAGTTGCTACCATGGGGATCCTTATTCAAACACTTGGGTTCTTGTATGTGTTCCCATTTTCACTAAGTATAGCCTTGACGACAAGAATTGGACACTCATTAGGTGCAGGGCAAGCATCCAAGGCCCAAAGTACAGCCATAATTGGGTTCATCACAGCATTTACCTTGGGGATCTCTGCCttcattttgttgatttttctgAGGAAATCATGGGGGAAACTCTTCACTGATGAGATGCAAATTATTGATATGGTCACAACTATTCTTCCTATTCTTGGGTTGTGTGAGATTAGCAATTGGCCTCAAACAGTTTCATGTGGGATTTTATCAGGGACTGCAAGGCCTTATTTGGGTGCTAGAATAAACTTGTGTGCATTTTATCTAGTTGGATTGCCAGTTTCTATTTTTGCTACCTTCATGTACAAATATGAATTGGTGGGTTTGTGGTCTGGAATGGTTGCTGCACAGGCTTCTTGTCTTTGTATGATGGTGTACACATTGATTCAAACAGATTGGGGGCAGCAATGTAAGAGAGCAGTGGAGCTAGCTCAGAAAACAACAGAgcaggaaaataaaaatgatgaggAAAATGGCTTGCTTAGTTCTGAACAATGA 1605 0.4093 MCTGAESRGNINGEVVISKVGGDYEDRMRNLEGEERACKCGTFIQGLLQRIHHHLTALNLPSIPASELKEELQSLAKISCPIITTSLMLYSRSAVSMLFLGRQGKVELAGGSLALGFANITANSVLKGLTMGMDPICCQAYGAKRWSVLNQTFLRTLCLLLLVAIPISILWLNMEPILQMLGQDPEVTKVAQVYMVFSIPELLAQAHLNPLRTFLRTQGLTTPVTIAASCAALLHLPINYFLATYLNLGVKGIALATGLNSINMTLGLLLYLFFSKKPLKPWQGATILSAFHGWRPLLSLALPSCISVCLEWWWYEIMLFLCGLLSNPQATVATMGILIQTLGFLYVFPFSLSIALTTRIGHSLGAGQASKAQSTAIIGFITAFTLGISAFILLIFLRKSWGKLFTDEMQIIDMVTTILPILGLCEISNWPQTVSCGILSGTARPYLGARINLCAFYLVGLPVSIFATFMYKYELVGLWSGMVAAQASCLCMMVYTLIQTDWGQQCKRAVELAQKTTEQENKNDEENGLLSSEQ 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2494 534 PANTHER MULTIDRUG RESISTANCE PROTEIN 55 519 - -
Ssu4g2494 534 TIGRFAM matE: MATE efflux family protein 81 479 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu4g2494 534 PANTHER PROTEIN DETOXIFICATION 53 55 519 - -
Ssu4g2494 534 CDD MATE_eukaryotic 71 508 IPR045069 GO:0042910|GO:1990961
Ssu4g2494 534 Pfam MatE 81 241 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu4g2494 534 Pfam MatE 303 464 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2494 Ssu-Chr4 62910451 62916736 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2494 K03327 - gmx:106798137 987.638
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2494 4 62910451 62916736 Ssu4g2494 4 62910451 62916736 ECH
Ssu3g0972 3 22759265 22765806 Ssu4g2494 4 62910451 62916736 PCT