Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi19g0680 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0681 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0682 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0683 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g0684 Acco10g1012 . Accr4g01741 . . Adu07g00229 . . . . . . . . Alju08g1765 . . . . . Arst1g00314 Arst7g00365 . . Bisa09g0102 . Bva12g02683 . . . . . Dere04g1630 . . . Enph1g0697 . Glsi08g0149 . . . . . . . . . . . . . . . . . . . . . . Lapu6g02557 . Lasa2g02294 Lele01g1372 Lele02g1652 Lele03g1382 Lele04g1638 . . . . . Lja6g2490 . . . Mepo7g02851 . Mesa17g04426 Mibi05g1648 . . . . . Phco11g01933 Phco3g00200 Prci8g1073 . . . Pste7g01366 . . . . Pte4g00016 . . Pvu6g0516 Pvu8g2821 . . . . Spst6g01980 Spst8g00933 . . . . . . . . . . . . . . Vimu2g02464 Vimu1g00371 . . Vivi3g05455 Vivi7g02678 . .
Vvi19g0685 . . . . Adu01g00216 . . Aed4g2435 . . . . . . . . . . Apr2g0242 Apr9g1792 . . . . . . Bva12g02682 . Car02g02084 Car05g01064 . Cca09g01142 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu6g02557 . . . . . . . . . . . . . . Mal8g0369 . . . . . . . Mtr5g3338 Phac6g00661 . Phco11g01932 . . . . . Pste7g01367 . . . . . . . Pvu6g0517 . Rops11g02695 . Seca6g02988 . Spst6g01979 . . Ssu9g1015 Sto9g1960 . . Tpr4g0117 . . . Tsu05g03924 Vian6g00421 . Vifa1g09845 . Vimu2g02463 . Viun6g00845 . . . . Vra6g0181
Vvi19g0686 . . . . Adu01g00217 . . . Aev07g0188 . Ahy17g0324 Ahy11g0644 Aip07g00241 Aip01g00639 . . . . Apr2g0243 . . . Bach12g01406 . . . . . . . . . . . . Dod05g0755 . . . . . . . . . . . . . . . . . Lal11g0708 . . . . . . . . Lasa5g01105 . . . . . . . . . Lja6g1326 . . . . . . . . . . . . . . . . . Psa5g3994 . Pste7g01368 . . . . . . . Pvu6g0518 . . . . . Spst6g01978 . . . . . . . Trre5g01228 . . . . . . . Vimu2g02461 . . . . . . .
Vvi19g0687 . . . . Adu04g00473 . . . . . . . . . . . . . Apr2g0244 Apr9g1793 Arst4g00739 . . . . . Bva12g02681 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu6g01655 . Lasa1g01203 . . . . . . . . . . . . . Mepo6g01002 . Mesa5g03671 . . . . . Phac6g00661 . Phco11g00878 . . . . . . . Pte9g01263 Pte2g00460 . . Pumo2g00288 . Pvu6g1492 . Rops11g01130 . Seca6g04396 . Spst6g01255 . . . . . . . Trre3g01094 . . . . . Vifa1g09846 . Vimu2g01176 . Viun6g02213 . Vivi4g03203 . . .
Vvi19g0688 . Acco05g0932 . Accr3g01964 Adu01g00218 Adu07g00228 Aed3g2555 Aed4g2433 Aev07g0187 Aev01g0781 Ahy17g0323 Ahy11g0643 Aip07g00240 Aip01g00638 . Alju07g0954 . Amo11g0451 Apr2g0245 Apr9g1794 Arst1g00316 Arst7g00363 Bach12g01405 . . Bisa05g1998 . . Car02g02085 Car05g01065 Cca05g01987 Cca09g01143 . Dere05g1292 Dod08g0229 Dod05g0929 . Enph7g0053 . . Gma08g03018 Gma18g00768 . . Gso8g2677 Gso8g2677 . . Lal18g1595 . . . Lal5g0850 . Lan2g1339 . . . Lan2g1339 . . Lapu6g02556 Lasa5g01106 Lasa2g02295 . . . . . Lele26g1557 . Lele28g1549 Lja6g1325 . . . . . . . . . . . . . . Phco3g00199 . Prci2g2596 Psa5g3993 . Pste7g01370 Pste8g00368 . . . . . Pumo9g01834 Pvu6g0520 Pvu8g2822 . Rops9g00283 . Seca6g02987 Spst6g01977 Spst8g00934 Ssu6g3528 Ssu9g1016 . Sto5g1888 . . . . . . . Vian7g01149 . Vifa1g03380 . Vimu1g00370 . Viun8g02909 Vivi3g05452 Vivi7g02677 Vra6g0180 Vra6g0180
Vvi19g0689 . Acco05g0937 . Accr3g01962 . Adu07g00227 Aed3g2556 . Aev07g0186 . Ahy17g0322 . Aip07g00239 . . Alju07g0955 . . . Apr9g1795 . Arst7g00361 . Bach3g00900 . . Bva12g02680 . Car02g02086 . Cca05g01988 . . Dere05g1291 Dod08g0227 . . Enph7g0056 . . . . Gma02g02779 Gma14g00159 . . . . . Lal22g0061 Lal6g0057 . . . . . . . . . . . . Lasa2g02296 . . . . Lele25g1539 Lele26g1554 Lele27g0546 Lele28g1546 . . . Mal7g5307 . Mepo7g02853 . Mesa17g04428 . Mibi08g0808 . Mtr8g0269 . . . Phco3g00198 . Prci2g2592 . Psa2g0246 . Pste8g00359 . . . Pte8g00020 . Pumo9g01832 . Pvu8g2823 . Rops9g00282 . Seca8g00263 . Spst8g00935 Ssu6g3529 . . Sto5g1887 . Tpr5g3136 . Trre9g05066 . Tsu08g00246 . . . Vifa1g03383 . Vimu1g00369 . Viun8g02911 . Vivi7g02675 Vra6g0179 .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Aev Aev07g0186 Chr07 1058018 1062340 +
Ahy Ahy17g0322 Chr17 2992271 2997407 +
Aip Aip07g00239 Chr07 2049814 2053574 +
Dod Dod08g0227 Chr08 2589916 2595327 +
Vvi Vvi19g0680 Chr19 7430966 7431326 +
Vvi Vvi19g0681 Chr19 7441235 7441625 +
Vvi Vvi19g0682 Chr19 7443696 7444222 +
Vvi Vvi19g0683 Chr19 7450561 7450737 +
Vvi Vvi19g0684 Chr19 7454669 7455712 -
Acco Acco10g1012 Chr10 23991596 23992618 -
Accr Accr4g01741 Chr4 18475866 18476903 +
Adu Adu07g00229 Chr07 2188000 2189074 +
Alju Alju08g1765 Chr08 15022495 15023535 +
Arst Arst1g00314 Chr1 2885650 2886924 -
Arst Arst7g00365 Chr7 2338628 2340094 +
Bisa Bisa09g0102 Chr09 1116666 1117697 -
Bva Bva12g02683 Chr12 19672464 19678850 +
Dere Dere04g1630 Chr04 18322135 18323160 -
Enph Enph1g0697 Chr1 32962181 32963419 -
Glsi Glsi08g0149 Chr08 1331607 1334807 -
Lapu Lapu6g02557 Chr6 25544613 25546000 +
Lasa Lasa2g02294 Chr2 498578678 498579205 -
Lele Lele01g1372 Chr01 8441774 8442799 +
Lele Lele02g1652 Chr02 20296228 20297238 +
Lele Lele03g1382 Chr03 8356133 8357164 +
Lele Lele04g1638 Chr04 21230743 21231690 +
Lja Lja6g2490 Chr6 53756383 53757836 -
Mepo Mepo7g02851 Chr7 39445558 39446300 -
Mesa Mesa17g04426 Chr17 75197701 75198121 -
Mibi Mibi05g1648 Chr05 19817057 19818070 +
Phco Phco11g01933 Chr11 15779732 15780778 +
Phco Phco3g00200 Chr3 1477446 1478477 +
Prci Prci8g1073 Chr8 7159181 7160543 +
Pste Pste7g01366 Chr7 12355940 12361780 -
Pte Pte4g00016 Chr4 354997 357591 +
Pvu Pvu6g0516 Chr6 16418099 16419142 -
Pvu Pvu8g2821 Chr8 58271618 58272643 -
Spst Spst6g01980 Chr6 19468512 19469554 +
Spst Spst8g00933 Chr8 8255189 8256238 -
Vimu Vimu2g02464 Chr2 20406460 20407497 +
Vimu Vimu1g00371 Chr1 2203656 2204687 +
Vivi Vivi3g05455 Chr3 113088161 113089502 +
Vivi Vivi7g02678 Chr7 90669514 90670771 +
Vvi Vvi19g0685 Chr19 7471403 7472497 -
Adu Adu01g00216 Chr01 2881656 2882270 -
Aed Aed4g2435 Chr4 26558538 26559557 +
Apr Apr2g0242 Chr2 3017318 3020163 -
Apr Apr9g1792 Chr9 26872088 26873276 -
Bva Bva12g02682 Chr12 19670870 19671382 +
Car Car02g02084 Chr02 51224937 51226256 -
Car Car05g01064 Chr05 52169141 52170586 -
Cca Cca09g01142 Chr09 32672644 32677038 -
Lapu Lapu6g02557 Chr6 25544613 25546000 +
Mal Mal8g0369 Chr8 5163320 5164375 +
Mtr Mtr5g3338 Chr5 42304188 42305879 -
Phac Phac6g00661 Chr6 11475271 11486858 -
Phco Phco11g01932 Chr11 15770716 15771759 +
Pste Pste7g01367 Chr7 12369474 12369827 -
Pvu Pvu6g0517 Chr6 16424282 16425419 -
Rops Rops11g02695 Chr11 46450381 46450959 +
Seca Seca6g02988 Chr6 95878659 95879708 +
Spst Spst6g01979 Chr6 19449304 19450347 +
Ssu Ssu9g1015 Chr9 40737313 40738350 -
Sto Sto9g1960 Chr9 23745510 23746544 -
Tpr Tpr4g0117 Chr4 1392139 1393463 -
Tsu Tsu05g03924 Chr05 50235692 50236063 -
Vian Vian6g00421 Chr6 18023739 18024773 -
Vifa Vifa1g09845 Chr1 1603669257 1603670342 +
Vimu Vimu2g02463 Chr2 20398267 20399295 +
Viun Viun6g00845 Chr6 18217528 18218746 -
Vra Vra6g0181 Chr6 1344456 1345733 +
Vvi Vvi19g0686 Chr19 7474425 7475477 -
Adu Adu01g00217 Chr01 2882483 2882704 -
Aev Aev07g0188 Chr07 1069860 1070912 +
Ahy Ahy17g0324 Chr17 3006135 3007580 +
Ahy Ahy11g0644 Chr11 10525593 10527083 +
Aip Aip07g00241 Chr07 2062222 2063302 +
Aip Aip01g00639 Chr01 9901196 9902388 +
Apr Apr2g0243 Chr2 3025573 3029234 -
Bach Bach12g01406 Chr12 9971581 9972681 +
Dod Dod05g0755 Chr05 11751091 11755859 +
Lal Lal11g0708 Chr11 6884634 6885731 +
Lasa Lasa5g01105 Chr5 302391231 302392262 -
Lja Lja6g1326 Chr6 38207214 38208299 +
Psa Psa5g3994 Chr5 314480995 314483107 +
Pste Pste7g01368 Chr7 12376384 12377415 -
Pvu Pvu6g0518 Chr6 16429820 16431119 -
Spst Spst6g01978 Chr6 19436869 19437906 +
Trre Trre5g01228 Chr5 8670593 8671162 +
Vimu Vimu2g02461 Chr2 20381977 20383039 +
Vvi Vvi19g0687 Chr19 7477028 7478164 -
Adu Adu04g00473 Chr04 5633831 5635225 -
Apr Apr2g0244 Chr2 3028067 3029263 -
Apr Apr9g1793 Chr9 26874563 26875627 -
Arst Arst4g00739 Chr4 5612529 5613943 -
Bva Bva12g02681 Chr12 19668194 19669465 +
Lapu Lapu6g01655 Chr6 16405922 16407019 -
Lasa Lasa1g01203 Chr1 100043649 100044725 -
Mepo Mepo6g01002 Chr6 10508717 10510323 -
Mesa Mesa5g03671 Chr5 64337314 64338429 +
Phac Phac6g00661 Chr6 11475271 11486858 -
Phco Phco11g00878 Chr11 6504174 6508961 -
Pte Pte9g01263 Chr9 34129356 34130477 +
Pte Pte2g00460 Chr2 3538691 3540233 -
Pumo Pumo2g00288 Chr2 5410157 5411744 +
Pvu Pvu6g1492 Chr6 25717765 25719024 +
Rops Rops11g01130 Chr11 16534778 16535977 -
Seca Seca6g04396 Chr6 111569988 111571103 +
Spst Spst6g01255 Chr6 11580995 11582065 -
Trre Trre3g01094 Chr3 7925368 7926447 -
Vifa Vifa1g09846 Chr1 1603687421 1603688524 -
Vimu Vimu2g01176 Chr2 7831300 7832388 -
Viun Viun6g02213 Chr6 27880627 27881988 +
Vivi Vivi4g03203 Chr4 145575159 145576530 -
Vvi Vvi19g0688 Chr19 7478514 7492552 -
Acco Acco05g0932 Chr05 18306407 18309537 +
Accr Accr3g01964 Chr3 28779234 28813760 +
Adu Adu01g00218 Chr01 2886570 2898750 -
Adu Adu07g00228 Chr07 2182260 2187068 +
Aed Aed3g2555 Chr3 27756335 27766724 -
Aed Aed4g2433 Chr4 26545987 26556068 +
Aev Aev07g0187 Chr07 1064176 1068582 +
Aev Aev01g0781 Chr01 7441225 7483329 +
Ahy Ahy17g0323 Chr17 3000421 3005318 +
Ahy Ahy11g0643 Chr11 10507689 10522007 +
Aip Aip07g00240 Chr07 2056357 2061169 +
Aip Aip01g00638 Chr01 9883101 9897560 +
Alju Alju07g0954 Chr07 28455188 28487405 -
Amo Amo11g0451 Chr11 7585897 7594733 +
Apr Apr2g0245 Chr2 3030503 3043432 -
Apr Apr9g1794 Chr9 26876974 26887600 -
Arst Arst1g00316 Chr1 2890709 2903342 -
Arst Arst7g00363 Chr7 2333076 2337934 +
Bach Bach12g01405 Chr12 9959683 9970423 +
Bisa Bisa05g1998 Chr05 42664568 42665205 +
Car Car02g02085 Chr02 51226700 51232493 -
Car Car05g01065 Chr05 52174697 52187471 -
Cca Cca05g01987 Chr05 39733103 39745200 -
Cca Cca09g01143 Chr09 32692262 32718265 -
Dere Dere05g1292 Chr05 21126542 21142794 +
Dod Dod08g0229 Chr08 2606357 2612502 +
Dod Dod05g0929 Chr05 17725029 17733168 +
Enph Enph7g0053 Chr7 2845122 2867874 -
Gma Gma08g03018 Chr08 46771135 46772239 -
Gma Gma18g00768 Chr18 8349382 8351132 +
Gso Gso8g2677 Chr8 44431869 44445514 -
Gso Gso8g2677 Chr8 44431869 44445514 -
Lal Lal18g1595 Chr18 17458302 17465481 -
Lal Lal5g0850 Chr5 9614514 9632227 -
Lan Lan2g1339 Chr2 24133997 24141329 -
Lan Lan2g1339 Chr2 24133997 24141329 -
Lapu Lapu6g02556 Chr6 25524282 25541973 +
Lasa Lasa5g01106 Chr5 302395302 302412041 -
Lasa Lasa2g02295 Chr2 498597059 498602599 -
Lele Lele26g1557 Chr26 12138729 12165058 +
Lele Lele28g1549 Chr28 12764668 12786204 +
Lja Lja6g1325 Chr6 38193675 38206259 +
Phco Phco3g00199 Chr3 1467631 1476756 +
Prci Prci2g2596 Chr2 23186091 23225946 +
Psa Psa5g3993 Chr5 314445501 314474585 +
Pste Pste7g01370 Chr7 12385709 12399644 -
Pste Pste8g00368 Chr8 1925676 1936623 +
Pumo Pumo9g01834 Chr9 47492676 47502267 +
Pvu Pvu6g0520 Chr6 16439313 16451560 -
Pvu Pvu8g2822 Chr8 58273190 58281679 -
Rops Rops9g00283 Chr9 3491188 3498335 +
Seca Seca6g02987 Chr6 95861198 95877035 +
Spst Spst6g01977 Chr6 19414760 19419433 +
Spst Spst8g00934 Chr8 8257565 8268040 -
Ssu Ssu6g3528 Chr6 78436326 78450673 -
Ssu Ssu9g1016 Chr9 40751761 40759182 -
Sto Sto5g1888 Chr5 13905988 13929377 +
Vian Vian7g01149 Chr7 19770462 19792281 +
Vifa Vifa1g03380 Chr1 527791742 527798426 -
Vimu Vimu1g00370 Chr1 2189328 2198398 +
Viun Viun8g02909 Chr8 36863416 36872828 -
Vivi Vivi3g05452 Chr3 113071994 113086398 +
Vivi Vivi7g02677 Chr7 90651047 90658170 +
Vra Vra6g0180 Chr6 1329411 1339296 +
Vra Vra6g0180 Chr6 1329411 1339296 +
Vvi Vvi19g0689 Chr19 7495128 7500656 -
Acco Acco05g0937 Chr05 18402060 18407916 -
Accr Accr3g01962 Chr3 28644907 28651235 +
Adu Adu07g00227 Chr07 2174541 2179668 +
Aed Aed3g2556 Chr3 27768161 27774150 -
Aev Aev07g0186 Chr07 1058018 1062340 +
Ahy Ahy17g0322 Chr17 2992271 2997407 +
Aip Aip07g00239 Chr07 2049814 2053574 +
Alju Alju07g0955 Chr07 28590437 28598584 -
Apr Apr9g1795 Chr9 26888463 26895099 -
Arst Arst7g00361 Chr7 2325746 2330589 +
Bach Bach3g00900 Chr3 19680519 19685637 -
Bva Bva12g02680 Chr12 19661598 19667593 +
Car Car02g02086 Chr02 51233493 51238838 -
Cca Cca05g01988 Chr05 39746547 39750931 -
Dere Dere05g1291 Chr05 21054042 21059930 +
Dod Dod08g0227 Chr08 2589916 2595327 +
Enph Enph7g0056 Chr7 2950500 2958158 -
Gma Gma02g02779 Chr02 53377667 53399683 -
Gma Gma14g00159 Chr14 1283421 1289449 +
Lal Lal22g0061 Chr22 372077 379010 +
Lal Lal6g0057 Chr6 343174 349733 +
Lasa Lasa2g02296 Chr2 498630539 498634459 -
Lele Lele25g1539 Chr25 12285348 12291493 +
Lele Lele26g1554 Chr26 12053930 12060080 +
Lele Lele27g0546 Chr27 12967514 12973653 -
Lele Lele28g1546 Chr28 12722861 12728899 +
Mal Mal7g5307 Chr7 122624424 122630223 -
Mepo Mepo7g02853 Chr7 39461186 39467120 -
Mesa Mesa17g04428 Chr17 75211202 75216782 -
Mibi Mibi08g0808 Chr08 18108169 18114959 -
Mtr Mtr8g0269 Chr8 2962513 2968447 -
Phco Phco3g00198 Chr3 1459128 1464119 +
Prci Prci2g2592 Chr2 23139329 23146071 +
Psa Psa2g0246 Chr2 9358444 9363520 -
Pste Pste8g00359 Chr8 1908412 1915463 +
Pte Pte8g00020 Chr8 529456 534891 +
Pumo Pumo9g01832 Chr9 47469647 47475940 +
Pvu Pvu8g2823 Chr8 58283629 58289795 -
Rops Rops9g00282 Chr9 3482927 3489757 +
Seca Seca8g00263 Chr8 3218715 3224885 +
Spst Spst8g00935 Chr8 8271593 8276718 -
Ssu Ssu6g3529 Chr6 78463364 78469215 -
Sto Sto5g1887 Chr5 13895764 13902162 +
Tpr Tpr5g3136 Chr5 54161928 54167103 +
Trre Trre9g05066 Chr9 56319568 56323890 -
Tsu Tsu08g00246 Chr08 2211657 2216690 -
Vifa Vifa1g03383 Chr1 528157227 528161249 -
Vimu Vimu1g00369 Chr1 2182457 2186991 +
Viun Viun8g02911 Chr8 36875389 36881361 -
Vivi Vivi7g02675 Chr7 90639323 90644226 +
Vra Vra6g0179 Chr6 1322218 1327834 +