Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops9g00282 ATGTATAGGATAGCGTTGGACAGATTTGAGGGTGTTATTGTCTCTGATCAATGGCTTCAAAGCCAGTTTACACAGGTTGAACTTCGCAGCCTGAAATCAAAATTTGTTTCTTTAAAGAATCAGAATGGTAAAGTTACACTTGGAGATTTGCCGCCTTTAATGGTGAAGCTAAAATCATTCAATGACATGTACAATGAGGATGAGATTAGGGGGATATTGGGTGAATCAGGCACTGATTTTACCAATGATATTGATTTTGAAGCCTTCTTAAGGGTATATTTGAATTTGCGAAGCCAAGCTACAGTAAAACAAGGTGGTAAGAAGCACTCCTCGTCCTTCCTTAAGGAAACAGTGACTACCCTTCTTCACACAATCAGTGAATCAGAAAAAGCCTGTTATGTTGCTCACATAAACAGCTACCTTGGTGATGATCCATTTTTGAAGCAATATCTTCCTCTGGACCCAGCTACAAATGATCTTTTTGATCTTTGTAAAGATGGCGTTCTTCTTTGTAAACTTATCAATGTGGCTGTGCCTGGGACTATAGACGAGCGAGCCATCAATATCAAACGAAATCCTAGTCTTTGGGAGAGAAATGAGAACCATACTCTATGCCTTAATTCTGCCAAGGCTATTGGCTGCACTGTGGTTAACATTGGCACACAGGACTTAGTCGAAGCAATACCCCATCTTGTTCTAGGGTTGATTTCTCAAATCATAAAGATCCAACTGCTGGCAGATCTCAACCTTAGGAAGACACCTCAGCTTGTGGAATTGGTTGATGACAGCCAGGATATTGAAGAGCTTCTTAATCTGTCTCCTGAAAAGGTTCTGCTAAAATGGATGAATTTCCATCTCCAGAGAGGAGGCTACCAGAAAACTGTCAAAAATTTTTCTTCTGATGTTAAGGATGGAGAGGCTTATGCTTATCTGCTCAATGTCCTTGCCCCTGAACATTGTAGTGTGTCCACCTTGGATACTAAAGATGCCAATGAAAGGGCAAATCTGGTGCTTGATCATGCAGAGAGAATGGGCTGCAAAAGATACTTGACCCCAAGAGACATTGAGGAGGGTACCTCAAATCTGAATCTTGCATTTGTTGCACAATTGTTTCATCACAGGAGTGGCTTATCTACAGACACTAGAAAGATGTCCTATGCTGAGATGATTACAGATGATGTGCAAACATCTAGAGAAGAGAGATGCTTCCGGCTGTGGATCAATAGTCTTGGAATTTCTACTTATGTTTATAATCTATTTGAGGATGTCAGAAATGGATGGATACTTCTAGAAGTGCTAGACAAGATATTTCCAGGATCAGTTAACTGGAAACACGCAACAAGACCTCCTATTAAAATGCCATTTAGAAAAGTAGAGAACTGCAATCAGGTCGTAAAAATTGGTAAACAACTGAGATTCTCACTAGTCAATGTAGCTGGCAATGACATTGTGCAAGGAAATAAGAAGCTCATTCTTGCTTTATTGTGGCAGTTGATGAGATTCACAATGCTTCAACTGTTGAAAAATTTGAGATCTCATTCCCAAGGAAAGGAGATCAGTGATGCTGATATTCTGAAATGGGCAAACAGAAAAGTGAAGAGCACCGGCAGAACTTCTCAAATAGAGAGTTTCAAGGATAAGAGCTTGTCAAGTGGTCTCTTTTTCCTTGAGCTTCTGAGTGCTGTAGAGCCAAGGGTTGTCAATTGGAACCTTGTCACCAAAGGAGAAAGTGATGATGAGAAGAAGTTGAATGCCACCTATATAATCAGTGTTGCACGAAAGCTTGGTTGTTCCATCTTTTTGTTACCTGAGGATATTATGGAGGTCAATCAGAAGATGATTCTCACACTTGCAGCCAGTATAATGTATTGGAGCCTGCAACAACAAACTGAAGATGCAGATTCATTTCCTTCACCTGCTGGCACTGCCACCACACCTGAAGCATCTCCAGCACCTTCAGTTTGTGGTGAAGATGAAAGTTCCTCTCTTGGTGGTGAATTCTCCAACTTGAGTGTTGATGATACCACATCTGACACAACAGTCTCTTCACAAGATGAGCTATTATGA 2067 0.4074 MYRIALDRFEGVIVSDQWLQSQFTQVELRSLKSKFVSLKNQNGKVTLGDLPPLMVKLKSFNDMYNEDEIRGILGESGTDFTNDIDFEAFLRVYLNLRSQATVKQGGKKHSSSFLKETVTTLLHTISESEKACYVAHINSYLGDDPFLKQYLPLDPATNDLFDLCKDGVLLCKLINVAVPGTIDERAINIKRNPSLWERNENHTLCLNSAKAIGCTVVNIGTQDLVEAIPHLVLGLISQIIKIQLLADLNLRKTPQLVELVDDSQDIEELLNLSPEKVLLKWMNFHLQRGGYQKTVKNFSSDVKDGEAYAYLLNVLAPEHCSVSTLDTKDANERANLVLDHAERMGCKRYLTPRDIEEGTSNLNLAFVAQLFHHRSGLSTDTRKMSYAEMITDDVQTSREERCFRLWINSLGISTYVYNLFEDVRNGWILLEVLDKIFPGSVNWKHATRPPIKMPFRKVENCNQVVKIGKQLRFSLVNVAGNDIVQGNKKLILALLWQLMRFTMLQLLKNLRSHSQGKEISDADILKWANRKVKSTGRTSQIESFKDKSLSSGLFFLELLSAVEPRVVNWNLVTKGESDDEKKLNATYIISVARKLGCSIFLLPEDIMEVNQKMILTLAASIMYWSLQQQTEDADSFPSPAGTATTPEASPAPSVCGEDESSSLGGEFSNLSVDDTTSDTTVSSQDELL* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops9g00282 688 ProSiteProfiles Calponin homology (CH) domain profile. 397 503 IPR001715 GO:0005515
Rops9g00282 688 Gene3D - 250 378 IPR036872 -
Rops9g00282 688 ProSiteProfiles Calponin homology (CH) domain profile. 272 375 IPR001715 GO:0005515
Rops9g00282 688 CDD CH_AtFIM_like_rpt4 518 626 - -
Rops9g00282 688 FunFam Fimbrin-1 isoform A 511 623 - -
Rops9g00282 688 CDD CH_AtFIM_like_rpt3 395 508 - -
Rops9g00282 688 MobiDBLite consensus disorder prediction 632 688 - -
Rops9g00282 688 Gene3D - 118 248 IPR036872 -
Rops9g00282 688 ProSitePatterns Actinin-type actin-binding domain signature 2. 216 240 IPR001589 -
Rops9g00282 688 ProSitePatterns Actinin-type actin-binding domain signature 2. 475 499 IPR001589 -
Rops9g00282 688 MobiDBLite consensus disorder prediction 632 649 - -
Rops9g00282 688 PANTHER FIMBRIN/PLASTIN 9 629 IPR039959 GO:0051015|GO:0051017
Rops9g00282 688 SUPERFAMILY Calponin-homology domain, CH-domain 125 623 IPR036872 -
Rops9g00282 688 ProSiteProfiles Calponin homology (CH) domain profile. 127 244 IPR001715 GO:0005515
Rops9g00282 688 MobiDBLite consensus disorder prediction 662 688 - -
Rops9g00282 688 Gene3D - 511 623 IPR036872 -
Rops9g00282 688 Pfam Calponin homology (CH) domain 156 242 IPR001715 GO:0005515
Rops9g00282 688 Pfam Calponin homology (CH) domain 399 501 IPR001715 GO:0005515
Rops9g00282 688 Pfam Calponin homology (CH) domain 273 374 IPR001715 GO:0005515
Rops9g00282 688 Pfam Calponin homology (CH) domain 521 622 IPR001715 GO:0005515
Rops9g00282 688 Gene3D - 393 510 IPR036872 -
Rops9g00282 688 FunFam Fimbrin-2 like 393 510 - -
Rops9g00282 688 FunFam Fimbrin-2 isoform A 250 378 - -
Rops9g00282 688 FunFam Fimbrin-2 like 123 249 - -
Rops9g00282 688 ProSiteProfiles Calponin homology (CH) domain profile. 518 626 IPR001715 GO:0005515
Rops9g00282 688 SMART ch_5 274 373 IPR001715 GO:0005515
Rops9g00282 688 SMART ch_5 129 242 IPR001715 GO:0005515
Rops9g00282 688 SMART ch_5 399 501 IPR001715 GO:0005515
Rops9g00282 688 SMART ch_5 520 624 IPR001715 GO:0005515
Rops9g00282 688 SUPERFAMILY EF-hand 17 99 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops9g00282 Rops-Chr9 3482927 3489757 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops9g00282 9 683 EF-hand Containing Proteins AT5G55400 71.780 0.0 1004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops9g00282 K17275 - gmx:100794850 1244.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops9g00282 9 3482927 3489757 Rops9g00282 9 3482927 3489757 ECH