Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0688 ATGGCATCTTCAGATGATGAGGGTGAGACTCTGCCAGGGTCTGTCTCAAATTACCATTTTGTAGATGACAAAGGTGAACCCATTTCATTTTCGGTTCTGCCTATTCAATGGAGCAAGGGTGACAACCTGGATAGCAAGAAGGAACCTATTTTCTTGGATGGTAATGCTGACAATGGGCTACAGAAGATTTATAAGCAGGTCATTGCATGGAAGTTTGATCTTTCCGATGTGAATCCTGAAATATCAGTGCTCTCCAAGGAAAATAACTGGATCAAGCTTCAAAAGCCAAGGAAGAGCTTTGAGGATATTATCAGGTCTATCTTGATAACTGTGTGGTGTCTTCATTCTATGAAGAAAAATCCTGAAACATCTGGGAAATCATTATGGGATCACTTGTCTAGAGTTTTCAGCTTGTACGATGTCAGACCTTCTGAGAATGATTTGGTGGATCATACCACTTTAATCAGTGAAGCTGTTAAAAGGGATGAGGGCTTAGCAAAATCCAAGTTTTTGCTCACATTTCTTGAGGAGAAGCCCAGGAAGAGGAAATCTTTTGAGGATGTTCCAACTACATCAAAGCCTGGGTTTATAGTTGATTATATGGATGAAGATGGAATAAGTGAAACCGGAGAAGTTGGTTCTGATGAAGAGGAGGACCTGTTTGATTCTGTGTGTTCGATGTGTGATAATGGTGGTGATCTTTTGTGCTGTGAAGGGAGATGTATGAGGTCATTTCATGCAACTAAAGAAGCTGGAGAGGAATCACTCTGTGCTACACTTGGAATGTCTGTGGCTCAAGTAGAAGCCATGCAGAATTTTTATTGTAAAAACTGTAAATACAAGCAGCACCAGTGTTTCTCTTGTGGGAAGCTTGGCTCTTCTGACAAATCTTCAGGCGCTGAGGTCTTTCTCTGTGCTAATGCAACCTGTGGACGATTTTATCATCCACAATGCGTTGCAAAACTGCTTCACCGGGAGGATGAAGCTGCAGCAGAAGAGCTTCAGAAAAATATTTATGCAGGGGAATTATTTGCTTGCCCTATTCATAGATGCCATGTCTGTAAACAAGGAGAAGATAAAAAGGATCTGGAGTTGCAGTTTGCTATATGTAGACGTTGTCCCAAGTCATATCATAGGAAATGCCTGCCTAGGAAAATTTCTTTTGAAGACTTGGATGAAGAAGGAATCATACAGAGGGCTTGGGATGGCCTATTGCCCAACCGTATTTTGATATATTGCTTAAAACATGAGATTGATGAACTACTTGGGACCCCTATAAGAGATCACATAAAATTCCCTAATGATGAAGAAAAAATGGAAAAACGAAGATCGGAGTTGTTCTCAAGCAGAAAGGACTTGGACAAGGTTGTGTCAAAGAAGAGAAGTCTGGTCTCAGAAGACTCCCCACGTGAAAGAATGGCTGTCAAGGCAACGAAACAGGTTGAGAAGTTGTCTTCTACTGTGAAAGATGGTGATTCTACCAAAAAAAGTGAGAAAAGATCATCTGGACCAGATCCTTCAAAGAGACTCAAAGTAACTGGTTTCTCCAAAAAATCTTTGGATGACAATGTAAAATCCATTTCAAAGAAAGTGGATAAGTCATCCATGGCTGATGAAAACAAGACATCCTTGGGAGAACAGTTATATGCCCTAATCAAGAATAGGTCTGAGCCTAGGAAGGAGGATACACCTAATAGTGAACTGGAACAAAAGGTTGTCACAAAGAAAACGAGCAGTTCATTGCCTTCATTAGATCGGGATTCAGAGAATAGAATATTGGCCATAATTAAGGAGTCAAAGTCTTTAATAACTTTGGAAGATGTCATGAAAAAGCACAAAGTGCCATCTACCCATGCATACTCGTCAAAAAATACAGTTGACAGGACTATTACACAGGGAAAGGTGGAGGGCTCTATTGAGGCTCTTCGAGCAGCTTTAAAGAAGCTAGAAGGAGGGGGCAGTATTGAAGATGCAAAAGCTGTTTGTGAGCCAGAGGTTTTGAACCAGATAGTTAAGTGGAAGAACAAGCTTAAAGTTTATCTTGCACCTTTTCTCCATGGCATGCGGTATACTTCTTTTGGTCGCCACTTCACAAAAGTGGACAAGCTTAAAGAGATTGTTGAGAAGCTCCATTATTATGTAAAAAATGGTGACACAATAGTCGACTTTTGCTGCGGTGCTAATGATTTCAGTTGCCTGATGAAACAAAAGCTTGAGGAGATGGGGAAGAAGTGCTCATACAAAAATTATGATGTTATTCAACCCAAGAATGATTTTAACTTTGAGAAGAGGGATTGGATGAGTGTTAAACAGAAGGAATTACCTACAGGGTCACAATTGATCATGGGGCTAAATCCTCCCTTTGGAGTTAAAGCGTCTCTGGCAAACATGTTTATTAATAAAGCTCTTCAGTTTAAACCAAAACTCCTTATTCTTATTGTTCCCCCAGAAACGGAAAGGCTAGATAAAAAGAGACCACCATATGATCTGATTTGGGAGGATGATAATGAACTCTCAGGCAAGTCGTTTTATTTGCCTGGATCTGTTGATGTAAATGACAAACAAATTGAGCAATGGAATGTGAACCCACCATTACTCTACCTTTGGAGCCGGCAAGATTGGACTACTAAACACAGGGCCATTGCTCAAAAGTGTGGCCATGTTTCCAGGCGACGCAGAGTGTCACATTTGGAAAAAATTCAGAATGAAGAGCCAGTCCTTGATCATCCAATGGCGGATCAGACTCATTCTGGTCATGTCTCCATGATGCTGGATGAGCATTCAGTGGAAAATCATGAACTTGAACACGAAGAAAGAAGAGAAATTGTGACTGCAGGTCGTGTAGAAAGTTCTCCTCACAGTGGTGTTGACAGAGAAGACCATGGGAAGAAGCTTCTCAATGAGAACTCAAAACAGAGGCATGGTAAAGGGAAGCATGAAAAAAGAACAGAGAATATATCAGATGACAAACAGATAATGACACCTGTGAGTGAGATGTGCAAGGGAACTTCTTGCACTTCCTCACCTCGTGCAAGTGATGCCAGGTCCACAGTGGACATTCACCAACCTGAAGCCCTCAAGAAGTCCTCACCTGTGGAGGTTGGCGAGGAAGTTTATCCACATTTCCAGCCTGGTGTTCCTGACTCAAGTTTACAGAGAACAGGATATGGTGGGTCTCATGCTAGCATTCCAGAGGACATGGCAAGGAGGTACAGGCTGGACAGTGAAGAACCTTTTTCTAGTACGATCCACAGATGGTCAACTGGTGTTAGTCCTGGCCTTGATTATGGAATTAGGAACTCAGAGGAACCATTTACCAGTTACATGAGAGGCAGCATTGACAACCTTGGTTATAGGCATAGCATCCGAGACAGAGATGAGTATGGAAGGAATGCAGATATACGATCACAAGTTCAATCTTATGGGCTACATGATCCCATTGGTATGTCTCAGAGGAGCAACTATTTAGCTGGTCAGGATCCCCGGTTTGGCCAAATGGGTTCATTTCCATCTACTTATGGGCATCCAGGTTCAGGAGCGGAGTCATCTTACAGTAGGATGAACACATCAGCAATGCAGCGATATGCGCCTCAACTCGATGAATTAAACCACACAAGGATGAATTCTTTTGGATATGAACGGCCCATGCCAATTAGAAATAACATCTATGATCCTCTTGCACCCCCCCGACCTGGATTCCAAGCTGATTCAATGGGCTTTGCTCCGGGCCTTCATCACCCATTTTCAAAGCAAAACTCATCTGGTTGGCTCAATGAGTAG 3780 0.4206 MASSDDEGETLPGSVSNYHFVDDKGEPISFSVLPIQWSKGDNLDSKKEPIFLDGNADNGLQKIYKQVIAWKFDLSDVNPEISVLSKENNWIKLQKPRKSFEDIIRSILITVWCLHSMKKNPETSGKSLWDHLSRVFSLYDVRPSENDLVDHTTLISEAVKRDEGLAKSKFLLTFLEEKPRKRKSFEDVPTTSKPGFIVDYMDEDGISETGEVGSDEEEDLFDSVCSMCDNGGDLLCCEGRCMRSFHATKEAGEESLCATLGMSVAQVEAMQNFYCKNCKYKQHQCFSCGKLGSSDKSSGAEVFLCANATCGRFYHPQCVAKLLHREDEAAAEELQKNIYAGELFACPIHRCHVCKQGEDKKDLELQFAICRRCPKSYHRKCLPRKISFEDLDEEGIIQRAWDGLLPNRILIYCLKHEIDELLGTPIRDHIKFPNDEEKMEKRRSELFSSRKDLDKVVSKKRSLVSEDSPRERMAVKATKQVEKLSSTVKDGDSTKKSEKRSSGPDPSKRLKVTGFSKKSLDDNVKSISKKVDKSSMADENKTSLGEQLYALIKNRSEPRKEDTPNSELEQKVVTKKTSSSLPSLDRDSENRILAIIKESKSLITLEDVMKKHKVPSTHAYSSKNTVDRTITQGKVEGSIEALRAALKKLEGGGSIEDAKAVCEPEVLNQIVKWKNKLKVYLAPFLHGMRYTSFGRHFTKVDKLKEIVEKLHYYVKNGDTIVDFCCGANDFSCLMKQKLEEMGKKCSYKNYDVIQPKNDFNFEKRDWMSVKQKELPTGSQLIMGLNPPFGVKASLANMFINKALQFKPKLLILIVPPETERLDKKRPPYDLIWEDDNELSGKSFYLPGSVDVNDKQIEQWNVNPPLLYLWSRQDWTTKHRAIAQKCGHVSRRRRVSHLEKIQNEEPVLDHPMADQTHSGHVSMMLDEHSVENHELEHEERREIVTAGRVESSPHSGVDREDHGKKLLNENSKQRHGKGKHEKRTENISDDKQIMTPVSEMCKGTSCTSSPRASDARSTVDIHQPEALKKSSPVEVGEEVYPHFQPGVPDSSLQRTGYGGSHASIPEDMARRYRLDSEEPFSSTIHRWSTGVSPGLDYGIRNSEEPFTSYMRGSIDNLGYRHSIRDRDEYGRNADIRSQVQSYGLHDPIGMSQRSNYLAGQDPRFGQMGSFPSTYGHPGSGAESSYSRMNTSAMQRYAPQLDELNHTRMNSFGYERPMPIRNNIYDPLAPPRPGFQADSMGFAPGLHHPFSKQNSSGWLNE* 1260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0688 1259 MobiDBLite consensus disorder prediction 554 574 - -
Vvi19g0688 1259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 399 IPR013083 -
Vvi19g0688 1259 MobiDBLite consensus disorder prediction 1225 1259 - -
Vvi19g0688 1259 MobiDBLite consensus disorder prediction 554 569 - -
Vvi19g0688 1259 CDD PHD2_NSD 284 349 - -
Vvi19g0688 1259 MobiDBLite consensus disorder prediction 945 984 - -
Vvi19g0688 1259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 221 281 IPR013083 -
Vvi19g0688 1259 CDD PHD3_NSD 350 416 - -
Vvi19g0688 1259 SMART PHD_3 284 350 IPR001965 -
Vvi19g0688 1259 SMART PHD_3 224 279 IPR001965 -
Vvi19g0688 1259 SMART PHD_3 351 417 IPR001965 -
Vvi19g0688 1259 Pfam Cytosine specific DNA methyltransferase replication foci domain 15 136 IPR022702 -
Vvi19g0688 1259 MobiDBLite consensus disorder prediction 999 1015 - -
Vvi19g0688 1259 MobiDBLite consensus disorder prediction 458 516 - -
Vvi19g0688 1259 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 5 903 - -
Vvi19g0688 1259 MobiDBLite consensus disorder prediction 999 1018 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0688 Vvi-Chr19 7478514 7492552 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0688 - - vvi:100243584 2537.3