Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0227 ATGTCAAAATTTGAGGGTGTTCTTGTCTCTGATCAATGGCTTCAAAGCCAGTTTACACAGGTTGAACTTCGCACCCTGAAATCAAAGTTTGTCTCTTTAAAGAATCAGAGTGGTAAAGTTACATTTGGAGATCTGCCACCTCTAATGGTGAAGCTAAAGGCATTCAGAGACATGTACAGTGAAGATGAGATTAGGGGGATATTGGGTGAGTCAGGCACTGACTTGACCAATGATGTTGATTTTGAAGCCTTCTTAAGGGCCTATTTGAATTTGCAAACTAATGCCACAGCCAAACAAGGTGGTAGGAAGCATTCTTCATCGTTTCTTAAGGAAACTATAACTACCCTTCTTCACACAATCAGTGAATCAGAAAAAGCCTGTTATGTTGCTCACATAAACAGCTACCTAGGCGACGATCCATTTTTGATGCAATATCTTCCTTTGGACCCGGCTACTAATGATCTATTCGATCTCGTAAAAGACGGCGTTCTTCTGTGTAAGCTTATCAATGTTGCTGTGCCCGGGACTATAGATGAGCGAGCCATCAACACCAAACGAAATCCTAGCCTTTGGGAGAGGAATGAGAACCATACTCTATGCCTCAATTCTGCCAAGGCTATTGGCTGTACAGTGGTCAATATTGGCACACAGGATTTAGTTGAAGGAAGACCTTATCTTGTTCTAGGGTTGATTTCCCAAATCATAAAGATCCAACTGTTGGCAGATCTCAACCTCAAGAAAACACCTCAGCTTGTGGAATTGGTTGATGACAGCCAGGAGATTGAAGAGCTTCTTAATTTGTCCCCTGAGAAGGTTCTACTAAAATGGATGAACTTTCATCTTCAGAGAGGAGGTTATGAGAAAACTGTCAAAAATTTTTCTTCTGATCTTAAGGATGGAGAGGCTTATGCTTACCTGCTTAACGTCCTTGCTCCTGAACATAGCAGCCCTACCACATTGGATACTAAGGCTGCCAATGAAAGGGCAAATCTAGTGCTTGATCATGCAGAGAAAATGGGCTGCAAAAGATACTTGACCCCAAAGGACATTGCAGAAGGTTCTTCAAATCTGAATCTTGCATTTGTCGCACAATTGTTTCACCACAGGAGTGGCTTATCTACGGATACTAAAAAGATGTCCTATGCCAAAATGATGACAATGGATGATGTACAAACATCTAGAGAAGAGAGATGCTTTCGGCTGTGGATAAATAGTCTTGGAATTGCTACTCACATAAATAATCTATTTGAAGATGTCCGAAATGGATGGGTACTTTTAGAAGTTCTGGACAAGATTTTTCCAGGATCAGTTAATTGGAAACAGGCAACAAGACCTCCAATTAGGATGCCCTTCAGAAAAGTAGAGAACTGCAATCAGGTCATAAAAATTGCAAAACAACTACGATTCTCACTAGTCAATGTTGCCGGCAACGACATTGTGCAAGGAAATAAGAAGCTCATTCTTGTTGATGAGATTCACAATGCTTCAACTGTTGAAAATTTGAGATCTCACTCCCAAGCAAAGGAGATCAGTGATGCTGATATCCTAAAATGGGCAGACAGGAAAGTGAAGAGCACCGGCAGAACTTCTCATATAGAGAGTTTCAAGGACAAGAGCTTGTCAAGTGGAATCTTTTTCCTTGAGCTTCTCAGTGCTGTAGAGCCTAGAGTTGTGAATTGGAATCTTGTCACCAAGGGTGAAAGCGTTGATGAGAAGAAACTGAATGCCACGTATATAATCAGCGTTGCACGAAAGCTTGGTTGTTCCATCTTTCTGTTACCTGAGGATATTATGGAGGTAAATCAGAAGATGATTCTCACTCTCACAGCCAGTATAATGTACTGGAGCCTGCAACAACAAACTGAAGATACAGATTCATTTCCTTCACCAGCTGGTACTGCTACCTACGACCACGCCGGAGGCATCCCCTGCGCCATCGTGTCCTCACAACTTGAATCTGAGGGTGTTCTCCCAGGGGATGAGCTATGA 1989 0.4208 MSKFEGVLVSDQWLQSQFTQVELRTLKSKFVSLKNQSGKVTFGDLPPLMVKLKAFRDMYSEDEIRGILGESGTDLTNDVDFEAFLRAYLNLQTNATAKQGGRKHSSSFLKETITTLLHTISESEKACYVAHINSYLGDDPFLMQYLPLDPATNDLFDLVKDGVLLCKLINVAVPGTIDERAINTKRNPSLWERNENHTLCLNSAKAIGCTVVNIGTQDLVEGRPYLVLGLISQIIKIQLLADLNLKKTPQLVELVDDSQEIEELLNLSPEKVLLKWMNFHLQRGGYEKTVKNFSSDLKDGEAYAYLLNVLAPEHSSPTTLDTKAANERANLVLDHAEKMGCKRYLTPKDIAEGSSNLNLAFVAQLFHHRSGLSTDTKKMSYAKMMTMDDVQTSREERCFRLWINSLGIATHINNLFEDVRNGWVLLEVLDKIFPGSVNWKQATRPPIRMPFRKVENCNQVIKIAKQLRFSLVNVAGNDIVQGNKKLILVDEIHNASTVENLRSHSQAKEISDADILKWADRKVKSTGRTSHIESFKDKSLSSGIFFLELLSAVEPRVVNWNLVTKGESVDEKKLNATYIISVARKLGCSIFLLPEDIMEVNQKMILTLTASIMYWSLQQQTEDTDSFPSPAGTATYDHAGGIPCAIVSSQLESEGVLPGDEL* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0227 662 ProSitePatterns Actinin-type actin-binding domain signature 2. 211 235 IPR001589 -
Dod08g0227 662 SUPERFAMILY Calponin-homology domain, CH-domain 120 614 IPR036872 -
Dod08g0227 662 SMART ch_5 124 237 IPR001715 GO:0005515
Dod08g0227 662 SMART ch_5 511 615 IPR001715 GO:0005515
Dod08g0227 662 SMART ch_5 269 368 IPR001715 GO:0005515
Dod08g0227 662 SMART ch_5 395 504 IPR001715 GO:0005515
Dod08g0227 662 ProSiteProfiles Calponin homology (CH) domain profile. 509 617 IPR001715 GO:0005515
Dod08g0227 662 PANTHER FIMBRIN/PLASTIN 3 634 IPR039959 GO:0051015|GO:0051017
Dod08g0227 662 ProSiteProfiles Calponin homology (CH) domain profile. 393 499 IPR001715 GO:0005515
Dod08g0227 662 ProSiteProfiles Calponin homology (CH) domain profile. 122 239 IPR001715 GO:0005515
Dod08g0227 662 CDD CH 394 488 IPR001715 GO:0005515
Dod08g0227 662 Gene3D - 245 373 IPR036872 -
Dod08g0227 662 Gene3D - 389 501 IPR036872 -
Dod08g0227 662 CDD CH 268 368 IPR001715 GO:0005515
Dod08g0227 662 Gene3D - 502 614 IPR036872 -
Dod08g0227 662 CDD CH 122 237 IPR001715 GO:0005515
Dod08g0227 662 Pfam Calponin homology (CH) domain 395 488 IPR001715 GO:0005515
Dod08g0227 662 Pfam Calponin homology (CH) domain 151 237 IPR001715 GO:0005515
Dod08g0227 662 Pfam Calponin homology (CH) domain 268 369 IPR001715 GO:0005515
Dod08g0227 662 Pfam Calponin homology (CH) domain 512 613 IPR001715 GO:0005515
Dod08g0227 662 ProSiteProfiles Calponin homology (CH) domain profile. 267 370 IPR001715 GO:0005515
Dod08g0227 662 Gene3D - 113 243 IPR036872 -
Dod08g0227 662 PANTHER FIMBRIN-1 3 634 - -
Dod08g0227 662 SUPERFAMILY EF-hand 12 94 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0227 Dod-Chr8 2589916 2595327 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0227 1 620 EF-hand Containing Proteins AT5G55400 71.815 0.0 932
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0227 - K17275 gmx:100794850 1145.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g0227 08 2589916 2595327 Dod08g0227 08 2589916 2595327 ECH