Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00359 CACGGTCTGTTCTCTTCTCTGTCACTTTGCCTACCCACTAAGAAAAATCGATCCTTTCTTCTCTTCCCCACGCTTCTCTCATTCATTGTTGTTAGTGAAATAATGAAGGGGTAGTTGAACATTCATACATTTTTATGTGTGGGTATGTTCCCATTATTAATATTAATTTCACTCTTTGACTTCAACACATACAATGCATCCCCATCTGCGTCTTTCTTACTCAATTTCTTCTCTTTCTTTCCTTCTTCCTCCATCTCAACCTTCCCAACTGATTTTTTCTCTTTCGGGGAGGGGATAGCGTTGGACAGGTCGGTGACTCCGGGAGATAAACCACTTCTTGTTTGTGTTTTGTTGTAGATTTGGACTTATATTTGAATTTGACATTGTAAAACATTGCTTCTGGCAATAGGTTGTTAGTGAACACAACGCATTGTTCGTAGCAAATTGCAAATATTTTAAAGCCTTTTTTTGGGGGGGAATTTTGTAGTTTGGGATACAATTCAATACAATTTGTAGCTTTTGTTAGTGATTCTCCAAATACAATTTGTAGCTTTTGTTATTGATTCTCCAAGATGTCGAAATTTGAGGGCGTTCTTGTCTCCGATCAATGGCTTCAAGGCCAGTTCACGCAGGTTGAGCTTCGCAGTCTGAAATCAAAATTTATCTCTTTAAAGAATCAGAATAGTAAAGTTACATTTGGAGATTTGCCGCCTTTAATGGCAAAGCTAAATGCATTCAGAGACATGTATGGTGAAGATGAGATTAGGGGGATCTTGGGTGAGTCAGGCACTGACTTTACCAATGACATTGATTTTGAAGCCTTCTTGAAGGCATATTTGAATTTACAAAGCCAAGCTACTGCAAAACAAGGTGGTAGGAGGCACTCCTCATCATTCCTCAAGGAAACCGTTACCACCCTTCTTCACACAATAAGTGAATCAGAAAAGGCCTGCTATGTTGCCCACGTAAACAGCTATCTTGGTGATGATCCATTTTTGAAGCAATATCTTCCATTGGACCCAGCTACAAATGAAATATTTGATCTTGCTAAAGATGGCATTCTTCTGTGTAAGCTTATCAATGTTGCTGTGCCTGGGACTATAGATGAGCGAGCCATCAATTGCAAACGGAATCCTAGTCTTTGGGAGGTAAACGAGAACCATACCCTATGCCTCAATTCTGCCAAGGCTATTGGTTGCACAGTGGTTAACATTGGTGCACAAGACTTAGTTGAAGGAAGACCTCATCTTGTTCTAGGGTTGATTTCGCAAATCATAAAGATTCAGCTGCTGGCAGATCTCAACCTTAAGAAGACACCTCAGCTAGTGGAATTGGTTGATGACAACGAGGAGATCGAAGAGCTTCTTAATTTGTCTCCTGAAAAGGTTCTACTAAAATGGATGAACTTTCATCTCCAGAGAGCAGGTTATGAGAAAACTGTCAGAAATTTTTCTTCTGATGTTAAGGATGGAGAGGCTTATGCTTATCTGCTTAATGTCCTTGCTCCTGAACATTGCAGTCCAGCCACATTGGATACCAAGGATGCCAATGAAAGGGCAAATCTGGTTCTTGATCATGCAGAGAAAATGGGGTGCAAAAGATACTTGACCCCAAGGGATGTTGCTGAGGGTACTTCAAATTTGAATCTTGCATTTGTTGCACAATTGTTTCATCATAGTGGAAGGTTCCTTGGTTTGGATTACTGTGATCATAATCATTTGGTGATGCATTTGAGTGGTAGGAGGAGTGGTCTATCAACAGACACTAGAAAGATGTCCTATGCTGAGATGATGACAGATGATGTGCAAACATCTAGAGAAGAGAGATGCTTCCGATTGTGGATCAATAGTCTTGGAATTTCTACACATGTAAATAATCTATTTGAGGATGTCAGAAATGGATGGATACTTTTAGAAGTGCTAGACAGGATTTTTCCAGGATCAGTTAACTGGAAACAGGCAACAAGACCTCCAATTAAAATGCCATTCAGAAAAGTAGAGAACTGCAATCAGGCCATAAAAATTGGTAAACAACTGAGATTCTCCCTAGTCAATGTTGCTGGCAATGACATAGTGCAAGGAAATAAGAAACTCATTCTTGCTTTACTGTGGCAGCTGATGCGATTCACAATGCTTCAACTGTTGAAAAATTTGAGATCTCATTCCCAAGGAAAGGAGATCAGTGATGCTGATATCCTGAGATGGATGAACAGAAAAGTGAAGAGCGGTGGCAGAAATTCTCACATAGAGAGCTTCAAGGATAAGAGCTTGTCAAGTGGACTCTTTTTCCTTGAGCTTTTGAGTTCTGTTGAGCCTAGGGTTGTCAATTGGAACCTTGTGACCAAGGGTGAAAGTGATGATGAGAAAAGGTTGAATGCCACCTATATAATCAGCGTTGCACGTAAGCTTGGTTGTTCCATCTTTTTGTTACCTGAGGATATTATGGAGGTCAATCAGAAGATGATTCTCACTCTTGCAGCCAGTATAATGTATTGGAGCTTGCAACAACAGACAGAAGACACAGATTCATCTCCTTCACCTACTGACACTGCGACTACCAACACACCAGAAGCATCCCCGGCACCTTCGGTATGTGGCGAAGACGAAAGCTCCTCCATGGGTGGTGAATTCTCCAACATGAGTGTTGATGATGCCACCTCCGACACCACAGCCACTTCTTCTGATGGCGTTTCTGCTGGAGATGAGCAGTTATGAGGCATGAAATGAGACTAAAATGTTTGTTAGTAACATTGCATTTTGCAAAGCAAAGCTTAAGAAACACCTCCACCACGATCTCAAGTCTCAACCTTAAAACATGTTGCGTATGTGTAAACAAACCATACAATAGTAGATGTGAATAGTCTGTACAAAAATATCTTGTTATTCGGAGAGGAATGCTTTTGCTTGTTCAGAGGGATCAGAATTCAGAAAAGAACGAATAAAACCATTACTGTATTTTCTACTTCTGTCATTCATTACGTTATGATGGCAACCCAAAAATTAATAAGTTCTCTTTCA 3017 0.4034 MSKFEGVLVSDQWLQGQFTQVELRSLKSKFISLKNQNSKVTFGDLPPLMAKLNAFRDMYGEDEIRGILGESGTDFTNDIDFEAFLKAYLNLQSQATAKQGGRRHSSSFLKETVTTLLHTISESEKACYVAHVNSYLGDDPFLKQYLPLDPATNEIFDLAKDGILLCKLINVAVPGTIDERAINCKRNPSLWEVNENHTLCLNSAKAIGCTVVNIGAQDLVEGRPHLVLGLISQIIKIQLLADLNLKKTPQLVELVDDNEEIEELLNLSPEKVLLKWMNFHLQRAGYEKTVRNFSSDVKDGEAYAYLLNVLAPEHCSPATLDTKDANERANLVLDHAEKMGCKRYLTPRDVAEGTSNLNLAFVAQLFHHSGRFLGLDYCDHNHLVMHLSGRRSGLSTDTRKMSYAEMMTDDVQTSREERCFRLWINSLGISTHVNNLFEDVRNGWILLEVLDRIFPGSVNWKQATRPPIKMPFRKVENCNQAIKIGKQLRFSLVNVAGNDIVQGNKKLILALLWQLMRFTMLQLLKNLRSHSQGKEISDADILRWMNRKVKSGGRNSHIESFKDKSLSSGLFFLELLSSVEPRVVNWNLVTKGESDDEKRLNATYIISVARKLGCSIFLLPEDIMEVNQKMILTLAASIMYWSLQQQTEDTDSSPSPTDTATTNTPEASPAPSVCGEDESSSMGGEFSNMSVDDATSDTTATSSDGVSAGDEQL 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00359 713 CDD CH_AtFIM_like_rpt3 412 525 - -
Pste8g00359 713 FunFam Fimbrin-2 like 410 527 - -
Pste8g00359 713 MobiDBLite consensus disorder prediction 646 713 - -
Pste8g00359 713 ProSitePatterns Actinin-type actin-binding domain signature 2. 492 516 IPR001589 -
Pste8g00359 713 SMART ch_5 537 641 IPR001715 GO:0005515
Pste8g00359 713 SMART ch_5 416 518 IPR001715 GO:0005515
Pste8g00359 713 SMART ch_5 269 368 IPR001715 GO:0005515
Pste8g00359 713 SMART ch_5 124 237 IPR001715 GO:0005515
Pste8g00359 713 Gene3D - 245 371 IPR036872 -
Pste8g00359 713 ProSiteProfiles Calponin homology (CH) domain profile. 414 520 IPR001715 GO:0005515
Pste8g00359 713 MobiDBLite consensus disorder prediction 646 669 - -
Pste8g00359 713 ProSiteProfiles Calponin homology (CH) domain profile. 535 643 IPR001715 GO:0005515
Pste8g00359 713 ProSitePatterns Actinin-type actin-binding domain signature 2. 211 235 IPR001589 -
Pste8g00359 713 Gene3D - 113 243 IPR036872 -
Pste8g00359 713 SUPERFAMILY EF-hand 13 95 IPR011992 -
Pste8g00359 713 FunFam Fimbrin-2 like 118 244 - -
Pste8g00359 713 MobiDBLite consensus disorder prediction 681 713 - -
Pste8g00359 713 SUPERFAMILY Calponin-homology domain, CH-domain 120 640 IPR036872 -
Pste8g00359 713 Gene3D - 410 527 IPR036872 -
Pste8g00359 713 Pfam Calponin homology (CH) domain 153 237 IPR001715 GO:0005515
Pste8g00359 713 Pfam Calponin homology (CH) domain 416 518 IPR001715 GO:0005515
Pste8g00359 713 Pfam Calponin homology (CH) domain 268 368 IPR001715 GO:0005515
Pste8g00359 713 Pfam Calponin homology (CH) domain 538 639 IPR001715 GO:0005515
Pste8g00359 713 Gene3D - 528 640 IPR036872 -
Pste8g00359 713 ProSiteProfiles Calponin homology (CH) domain profile. 122 239 IPR001715 GO:0005515
Pste8g00359 713 FunFam Fimbrin-2 isoform A 245 372 - -
Pste8g00359 713 FunFam Fimbrin-1 isoform A 528 640 - -
Pste8g00359 713 PANTHER FIMBRIN/PLASTIN 1 646 IPR039959 GO:0051015|GO:0051017
Pste8g00359 713 CDD CH_AtFIM_like_rpt4 535 643 - -
Pste8g00359 713 ProSiteProfiles Calponin homology (CH) domain profile. 267 370 IPR001715 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00359 Pste-Chr8 1908412 1915463 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00359 1 701 EF-hand Containing Proteins AT5G55400 66.993 0.0 975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g00359 8 1908412 1915463 Pste8g00359 8 1908412 1915463 ECH