Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g02779 ATGTCAAAATTTGAGGGTGTTATTGTCTCCGATCAATGGCTTCATAGCCAGTTCACGCAGGTTGAGCTTCGCAGCCTGAAATCAAAATTTGTCTCTTTAAAGAATCAGAATGGTAAAGTTACATTTGGAGATTTGCCGCCTTTGATGGTGAAGCTAAACGCATTCAGAGATATGTACAGTGAGGATGAGATTAGGGGTATCTTGGGTGAATCAGGCACTGATTTTACCAATGACATTGATTTTGAAGCCTTCTTAAAGGCATATTTGAATTTGCAAAGCCAAGCTACTACAAAACAAGGTGGTAGGAGACACTCCTCGTCATTCCTCAAAGAAACCGTGACCACCCTTCTTCACACAATCAGTGAATCAGAAAAGGCCTGCTATGTTGCCCACATAAACAGCTACCTTGGTGATGATCCATTTTTGAAGCAATATCTTCCTTTGGACCCAGCTACAAATGATATATTTGATCTTGCAAAAGATGGTGTTCTTCTGTGTAAACTTATCAATGTTGCTGTGCCTGGGACTATAGATGAACGGACCATCAATTGCAAACGGAATCCTAGTTTTTGGGAGGTAAACGAGAACCATACTCTATGCCTCAATTCAGCCAAGGCTATTGGCTGCACAGTGGTTAACATTGGCGCACAGGACTTAGTTGAAGGAAGACCTCATCTTGTTCTAGGGTTGATTTCCCAAATCATAAAGATTCAGCTGCTGGCTGATCTCAACCTTAAGAAGACACCTCAGCTTGTGGAATTGGTTGATGACAACGAGGAGATCGAAGAGCTTCTTAATTTGTCTCCTGAAAAGGTTCTACTAAAATGGATGAATTTTCATCTCCAGAGAGCAGGTTACGAGAAAACTGTCAGAAATTTTTCTTCTGATGTTAAGGATGGAGAGGCCTATGCTTATCTGCTTAATGTCCTTGCTCCTGAACATTGCAGTCCGGCCACCTTGGATACCAAGGACGCCAATGAAAGGGCAAATCTGGTTCTTGATCATGCAGAGAGAATGGGCTGCAAAAGATACTTGACCCCAAGGGATGTTGCAGAGGGTACTTCAAACTTGAATCTTGCATTTGTTGCACAATTGTTTCATCATAGGAGTTGTCTATCTACAGACACTAAGAAGATGTCCTATGCTGAGATGATGACGGATGATGTGCAAACATCTAGAGAAGAGAGATGCTTCCGAATGTGGATCAATAGTCTTGGAATTTCTACACATGTAAATAATCTGTTTGAGGATGTCAGAAATGGATGGATACTTTTAGAAGTGTTAGACAAGATATTTCCTGGATCAGTTAACTGGAAACATGCAACAAGACCTCCAATTAGAATGCCATTCAGAAAAGTAGAGAACTGCAATCAGGTCATAAAAATTGGTAAACAACTGAGATTCTCACTAGTCAATGTAGCTGGTAATGACATTGTGCAAGGAAATAAGAAGCTCATTCTTGCTTTATTGTGGCAGCTCATGCGATTCACAATGCTTCAACTGTTGAAAAATTTGAGATCTCATTCCCAAGGAAAGGAGATCAGTGATGCTGATATCCTGAAATGGGTGAACAGAAAAGTGAAGATCATTGGTAGAACTTCTCACATAGAGAGCTTCAAGgagaagagcttgtcaagtggactctttttccttgagcttctgagtgctgttgagcctagggttgtcaattggaaccttgtcaccaagggtgaaagtgatgatgagaagaggttgaatgccacttatataatcagcgttgcacggaagctcggttgttctatatttttgttaccTGAGGATATTATGGAGgttaatcagaagatgattctcactcttgcagccagtataatgtattggagcctGCAACAACAGACTGAAGACACGGATTCATTTCCTTCACCTGTCAACACTGCTACTACCACCACGCCCGAAGCATCCCCGGCACCTTCGGTGTGTGGTGAAGATGAAAGTTCCTCCATTGGCGGTGAATTCTCCAACTTGAGTGTTGACGATGCCACCTCTGACACCACAGCCACTTCTTCACAACCCGAGTCTGACAGTGTTTCTGCTGGAGATGAGCTCAAACACTCCTCACTTCTGCTTTTGCTTTCCCTTTCTCACGCTAAGGTGTGTATAAAGGAAGGCTTTGGGATGAAGAGGAGTAGGTCATCATCTGAAGATGAAGCTGAGACTGAGGCTGAGGTTCAGTCACTCTCTGTGTCAAATTACCACATTGTAGATGATGAGGACAATCCTGTATCTTTTGCTGTGTTGCCAATTCATTGGAGTGATTCTGAGAACTCTGAAGCCGCCAACAAAGGAAAGGTGTTCATAGATGGGGACACCGATAATGGGCTGAAGAAAATTTTCATGCAAGTCACCGCGTGGAGATTTGATCTCTCCAATGTGAGACTCGAGATATCTTTGCTTTCAAAGGATGGAAGGTGGATCAAGCTTCAGAAACCTAGGAAGGGGTTTCAGAATAAAATAAGGACCGTTTTGATCACCCTTCACTTCCTGCATCGTGTGAAGAAAAAACGTCAAATGTCTGAGATATCTGTCTGGCAAGACTTGAGTAAGGATACGGAGTTGAGCTCTTCTGGGGTTAAGCCTTCACAAAAGGATTTATCGGACCATGTGCCTTTGATTCGTGAAGCTGCCAAAAGGGACTCAGTCTTAGCTAAATCCAAGCTTTTACTCATGGTTTTGGAGAAACTGAATAGTCAAAAACTTCTTGATAAGGAAGTCAACGATTTGGCTCAACCTGGACTTACAGTTGTTGGAATTGACAGTGATATGATAGATGAATCTAATGAAGAATCAGAAGAAAGGGATGATCTGGATGTTTGTGCACTTTGTGACAATGGTGGTAATGTTACTTGTTGTGACGGAGTGTGCATGAGATCATTTCATGCTACTGTGGAGGCTGGTAGAGAAAATAGTTGTGTTTCTCTTGGTTTTACCCAGAAGGAAGTTGATGAGATCCAAAGCTTTTATTGTAAGAATTGTGAATATTATCAGCACCAATGCTTTGCATGTGGCAAGCTGGGGTCATCTGATAAAGTTAAGGGTGCCGAGGTTATTAAATGTGTTTCTGCGACCTGTGACCGTTTTTATCATCCACATTGTGTTGCAAAGTTACTTCCTCAGCTAGCTAAGCCTGTTGCAGAGGATCTTGAGAGAAATATTGCTGATCGGGTTCCTTTTATTTGTCCCCTTCATTATTGCTGTGTCTGTAAAGAATTGGAAAATAAGGTGGATCCTGAGTTGCAATTTGCTGTTTGTAGGCGTTGTCCAAAGTCATATCATCGCAAATGTTTGCCAAGAGAAATTGCTCCTAGCAACAGAGGTAACAAAAATATTATACAAAGGGCTTGGGAAGGTCTTTTACCAAATAACCGCATTCTGATATATTGCTTAAATCACAAGATCGATCGTGAACTTGGGACTCCTGTAAGAGATCATATAAAATTCCCCAATATGGAACCTACTGTTCAAAAAATTAATACTACTATTGAGCAGAAGGAACCTGCAACTAAAGAGAGGGTTATACTGAAGAAGAAAAATGTTGACTTAGATAATTCATCTGGCAAAAGCATTGCTAAAGGATCTAAATTGACTGGAAAACTGTCTTCTCACaaagttggtagcaagaagactaaaaagattatttctggttcaaatatctcaagaaagccaaaatcaaaagaaacatcaaggtgtttgactgaaaataagaggtcaatctcaaagaaatctgaaatgtctgactctgagcaaaactataaccagcctacaataggtgagatatatgctctccaaaaagagggtttgaagcgaatcaagcatgacaataaggtcaataatgtgattactaatcccctgtctgtgaagcctatcgaatcactgagtgttgaattgcctccaTTGGATGCTGATTCAGAAAAGAGTTTGTTGACTTTATTTAAAGAAGCTAGATCATCAATTACATTGGAGAGTGTCTTAGAAAAGCACACATTTGCTTCTACTCATACTCACCCGTTGAGAAATGTTGTGGAGAAGACCATTACAATGGGGAAGCTGGAATACTCAGTTAATGCTGTTCGAACAGCTTTAAGGAAATTAGAGAGTGGATGCAGCATTCAGGATGTAAAAGCTTTTTGTGACCCTGATGATCTGAAGCAGTTATTTAAGTGGAAGATTGTTGATAAACTTCATTGGTATGTCCAGAACAGTGATACGATTGTGGACTTCTGCTGTGGTGCTAATGATTTTAGCATCCTTATGAAGAAAAAGCTTGAGGAGAATGGGAAGAAATGCTCATACAGAAACTATGATTTACTTCCAACAAAGAATGATTTTAGTTTTGAAAGGAGGGATTGGATGACTGTCCAACCAACCGAGTTGCCAACAGGGTCACAGTTGATCATGGGGCTCAATCCGCCCTTTGGGCATAAAGCAGCATTGGCTAACAAGTTTGTAGATAAGGCTCTTGAGTTTAAACCAAAGCTCGTAATTCTTATAGTACCACCGGAGACAGAGAGGCTTGATAAAAAACAATCACCATATGATCTTATATGGGAGGACGAGAATTTTCTATCAGGCACGTCATTTTATCTACCTGGTTCAGTTGACAGACAAATGGACCAAAGGAATGCAAGGCCACCTCTACTCTCCCTTTGGAGCCGTCCTGACTGGACTACTAAACACAAGGTCATAGCCCAAGAGAATGGTCATGTATGCAGCCAGCATGAAGTATTAGATACAACTGATCATACTACGGATGGAAATTATGCTGCCAATTTAAAGTCAACTGATAATCAAGAAGATCAGGCATCTACTAGTGAAGGTCAGAAAAGAATCTTACATTATGGTAATAGTCAACTCAATCCAATCAAAGGAAAATCCTCAGGTGAAGGTCTTAAGCCCAAATCTGATGAGGTTGGTGACGTGGTACCTGGTCACGGTCCTTCCTGGGGCCACTCGAGAAATAATAACGAGCAAGTAGTTTCAGAGACAGAGTCATCTTGTAAGACGAATACACCAGCTATTGGACAATGTGAACCTTGCCTAGGTAATTTAAACCATGTCATGAGAAGCTCTTTGGTTTCTGAACCTCGTACATTCAGTACAAGTGGCAGTCTTGGACGTAGCGTACCCCAATCTAGATATGGTGGTGGGGGTTTGCTTGGTTTTGCTTCTGGTCCGAACTATGCATATGCAAGCCAGCATTCGTGTGGTTGGCTCGAGGAGTAA 5256 0.3739 MSKFEGVIVSDQWLHSQFTQVELRSLKSKFVSLKNQNGKVTFGDLPPLMVKLNAFRDMYSEDEIRGILGESGTDFTNDIDFEAFLKAYLNLQSQATTKQGGRRHSSSFLKETVTTLLHTISESEKACYVAHINSYLGDDPFLKQYLPLDPATNDIFDLAKDGVLLCKLINVAVPGTIDERTINCKRNPSFWEVNENHTLCLNSAKAIGCTVVNIGAQDLVEGRPHLVLGLISQIIKIQLLADLNLKKTPQLVELVDDNEEIEELLNLSPEKVLLKWMNFHLQRAGYEKTVRNFSSDVKDGEAYAYLLNVLAPEHCSPATLDTKDANERANLVLDHAERMGCKRYLTPRDVAEGTSNLNLAFVAQLFHHRSCLSTDTKKMSYAEMMTDDVQTSREERCFRMWINSLGISTHVNNLFEDVRNGWILLEVLDKIFPGSVNWKHATRPPIRMPFRKVENCNQVIKIGKQLRFSLVNVAGNDIVQGNKKLILALLWQLMRFTMLQLLKNLRSHSQGKEISDADILKWVNRKVKIIGRTSHIESFKEKSLSSGLFFLELLSAVEPRVVNWNLVTKGESDDEKRLNATYIISVARKLGCSIFLLPEDIMEVNQKMILTLAASIMYWSLQQQTEDTDSFPSPVNTATTTTPEASPAPSVCGEDESSSIGGEFSNLSVDDATSDTTATSSQPESDSVSAGDELKHSSLLLLLSLSHAKVCIKEGFGMKRSRSSSEDEAETEAEVQSLSVSNYHIVDDEDNPVSFAVLPIHWSDSENSEAANKGKVFIDGDTDNGLKKIFMQVTAWRFDLSNVRLEISLLSKDGRWIKLQKPRKGFQNKIRTVLITLHFLHRVKKKRQMSEISVWQDLSKDTELSSSGVKPSQKDLSDHVPLIREAAKRDSVLAKSKLLLMVLEKLNSQKLLDKEVNDLAQPGLTVVGIDSDMIDESNEESEERDDLDVCALCDNGGNVTCCDGVCMRSFHATVEAGRENSCVSLGFTQKEVDEIQSFYCKNCEYYQHQCFACGKLGSSDKVKGAEVIKCVSATCDRFYHPHCVAKLLPQLAKPVAEDLERNIADRVPFICPLHYCCVCKELENKVDPELQFAVCRRCPKSYHRKCLPREIAPSNRGNKNIIQRAWEGLLPNNRILIYCLNHKIDRELGTPVRDHIKFPNMEPTVQKINTTIEQKEPATKERVILKKKNVDLDNSSGKSIAKGSKLTGKLSSHKVGSKKTKKIISGSNISRKPKSKETSRCLTENKRSISKKSEMSDSEQNYNQPTIGEIYALQKEGLKRIKHDNKVNNVITNPLSVKPIESLSVELPPLDADSEKSLLTLFKEARSSITLESVLEKHTFASTHTHPLRNVVEKTITMGKLEYSVNAVRTALRKLESGCSIQDVKAFCDPDDLKQLFKWKIVDKLHWYVQNSDTIVDFCCGANDFSILMKKKLEENGKKCSYRNYDLLPTKNDFSFERRDWMTVQPTELPTGSQLIMGLNPPFGHKAALANKFVDKALEFKPKLVILIVPPETERLDKKQSPYDLIWEDENFLSGTSFYLPGSVDRQMDQRNARPPLLSLWSRPDWTTKHKVIAQENGHVCSQHEVLDTTDHTTDGNYAANLKSTDNQEDQASTSEGQKRILHYGNSQLNPIKGKSSGEGLKPKSDEVGDVVPGHGPSWGHSRNNNEQVVSETESSCKTNTPAIGQCEPCLGNLNHVMRSSLVSEPRTFSTSGSLGRSVPQSRYGGGGLLGFASGPNYAYASQHSCGWLEE 1751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g02779 1751 Pfam Cytosine specific DNA methyltransferase replication foci domain 739 847 IPR022702 -
Gma02g02779 1751 Pfam Calponin homology (CH) domain 395 496 IPR001715 GO:0005515
Gma02g02779 1751 Pfam Calponin homology (CH) domain 152 236 IPR001715 GO:0005515
Gma02g02779 1751 Pfam Calponin homology (CH) domain 268 369 IPR001715 GO:0005515
Gma02g02779 1751 Pfam Calponin homology (CH) domain 516 617 IPR001715 GO:0005515
Gma02g02779 1751 ProSiteProfiles Calponin homology (CH) domain profile. 122 239 IPR001715 GO:0005515
Gma02g02779 1751 MobiDBLite consensus disorder prediction 628 647 - -
Gma02g02779 1751 PANTHER FIMBRIN-1 3 687 - -
Gma02g02779 1751 ProSitePatterns Actinin-type actin-binding domain signature 2. 470 494 IPR001589 -
Gma02g02779 1751 ProSiteProfiles Calponin homology (CH) domain profile. 267 370 IPR001715 GO:0005515
Gma02g02779 1751 ProSiteProfiles Calponin homology (CH) domain profile. 513 621 IPR001715 GO:0005515
Gma02g02779 1751 CDD CH 268 368 IPR001715 GO:0005515
Gma02g02779 1751 Gene3D - 113 243 IPR036872 -
Gma02g02779 1751 MobiDBLite consensus disorder prediction 1590 1665 - -
Gma02g02779 1751 MobiDBLite consensus disorder prediction 1194 1211 - -
Gma02g02779 1751 Gene3D - 388 505 IPR036872 -
Gma02g02779 1751 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 945 1006 IPR013083 -
Gma02g02779 1751 MobiDBLite consensus disorder prediction 1592 1634 - -
Gma02g02779 1751 CDD CH 122 237 IPR001715 GO:0005515
Gma02g02779 1751 SMART ch_5 394 496 IPR001715 GO:0005515
Gma02g02779 1751 SMART ch_5 124 237 IPR001715 GO:0005515
Gma02g02779 1751 SMART ch_5 515 619 IPR001715 GO:0005515
Gma02g02779 1751 SMART ch_5 269 368 IPR001715 GO:0005515
Gma02g02779 1751 MobiDBLite consensus disorder prediction 628 690 - -
Gma02g02779 1751 MobiDBLite consensus disorder prediction 1194 1261 - -
Gma02g02779 1751 MobiDBLite consensus disorder prediction 659 688 - -
Gma02g02779 1751 Gene3D - 506 618 IPR036872 -
Gma02g02779 1751 SMART PHD_3 1076 1143 IPR001965 -
Gma02g02779 1751 SMART PHD_3 1009 1075 IPR001965 -
Gma02g02779 1751 SMART PHD_3 949 1004 IPR001965 -
Gma02g02779 1751 Gene3D - 245 372 IPR036872 -
Gma02g02779 1751 ProSiteProfiles Calponin homology (CH) domain profile. 392 498 IPR001715 GO:0005515
Gma02g02779 1751 ProSitePatterns Actinin-type actin-binding domain signature 2. 211 235 IPR001589 -
Gma02g02779 1751 MobiDBLite consensus disorder prediction 1233 1254 - -
Gma02g02779 1751 SUPERFAMILY EF-hand 13 95 IPR011992 -
Gma02g02779 1751 SUPERFAMILY Calponin-homology domain, CH-domain 120 618 IPR036872 -
Gma02g02779 1751 CDD CH 401 495 IPR001715 GO:0005515
Gma02g02779 1751 CDD PHD_SF 1075 1119 - -
Gma02g02779 1751 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1007 1124 IPR013083 -
Gma02g02779 1751 PANTHER FIMBRIN/PLASTIN 3 687 IPR039959 GO:0051015|GO:0051017
Gma02g02779 1751 CDD PHD2_NSD 1009 1074 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g02779 Gma-Chr2 53377667 53399683 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma02g02779 1 687 EF-hand Containing Proteins AT5G55400 69.472 0.0 995
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g02779 - K17275 gmx:100806429 2032.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g02779 02 53377667 53399683 Gma02g02779 02 53377667 53399683 ECH
Gma14g00159 14 1283421 1289449 Gma02g02779 02 53377667 53399683 GST