Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1795 ATGTCAAAATTTGAGGGTGTTATTGTCTCCGATCAATGGCTTCAAAGCCAGTTTACGCAGGTTGAACTTCGCAGCCTGAAATCAAAATTTGTCTCTTTAAAGAATCAGAATGGAAATGTTACGTTTGGAGATTTGCCACCTTTAATGGTGCAGCTAAAGGCATTCAGAGATATGTACGGTGAGGATGAGATTAGGGGGATCTTGGGTGAGTCAGGCACTGACTTTACCAATGATGTTGATTTTGAAGGCTTCTTAAGGGCATATTTGAATTTGCAAAGCCAAGCTATAGCAAAACAAGGTGGCAGGAAGCACTCATCATCATTCCTCAAGGAAACTGTAACCACCCTTCTTCATACGATCAGTGAATCCGAAAAAGCCTGCTATGTCACCCACATAAACAGCTACCTTGGCGATGATCCCTTTTTGCAGCAATATCTTCCATTGGACCCAGCTACAAACGATATATTTGATCTTGCAAAAGATGGCGTTCTTCTGTGTAAGCTCATAAATGTTGCTGTGCCTGGGACCATAGATGACCGAGCCATCAATGCCAAACGAAATCCTACTCTTTGGGAGAGAAATGAGAACCATACTCTGTGCCTCAATTCTGCCAAGGCTATTGGCTGCACGGTGGTTAACATTGGTACACAAGACTTAGTTGAAGGAAGACCTCATCTTGTTCTAGGGTTGATTTCCCAGATCATAAAGATTCAACTGCTGGCAGATCTCAACCTTAAGAAGACACCTCAACTTGTGGAATTGGTTGATGACAGCCAGGAGATTGAAGAGCTTCTTAATTTGTCTCCTGAAAAGGTTCTACTAAAATGGATGAACTTTCATCTCCAAAGAGGAGGTTACCAGAAAACTGTCAAAAATTTTTCTTCTGATGTTAAGGATGGAGAGGCTTATGCTTATCTGCTTAATGTCCTTGCCCCTGAACATTGTAGTCCAGCCACCTTGGATACTAAGGATGTAAATGATAGGGCAAATCTGGTTCTTGATCATGCAGAGAGAATGGGTTGCAAAAGATACCTGACTTCAAGGGACATTGCAGAGGGTACCTCAAATTTGAATCTTGCATTTGTCGCACAATTGTTTCATCACAGGAGTGGTCTATCTACAGACACTAAAAAAATATCATATGCTGAGATGATGACGGATGATGTGCAAACATCTAGAGAAGAGAGATGCTTCCGGCTGTGGATCAATAGCCTTGGAATTTCTACTTACGTAAATAATCTGTTTGAGGATGTCAAAAATGGATGGATACTTTTAGAAGTGCTAGACAAGATTTTTCCAGGATCAGTTAACTGGAAACAGGCAACTAGACCTCCAATTAAAATGCCATTCAGAAAAGTAGAGAACTGCAATCAGGTCATAAAAATTGGTAAAGAGCTGAGATTCTCACTAGTCAATGTTGCTGGCAATGACATTGTGCAAGGAAATAAGAAGCTTGTTCTTGCTTTACTGTGGCAGCTGATGAGATTCACAATTCTTCAACTGTTGAAAAATTTGAGAAATCATTCCCAAGGAAAGGAGATCAGTGATGCTGATATCCTGAAATGGGCAAACAGAAAAGTGAAGAGCACTGGCAGAACTTCTCACATAGAGAGTTTCAAGGACAAGAGCTTATCAAGTGGACTCTTTTTCCTTGAGCTTCTGAGTGCTGTTGAGCCAAGGGTTGTCAATTGGAACCTTGTCACTAAGGGTGAAAGTGATGATGAGAAGAAGTTGAATGCCACCTATATAATCAGTGTTGCGCGAAAGCTTGGTTGTTCCATCTTTTTGTTACCTGAGGACATTATGGAGGTAAATCAGAAGATGATTCTCACTCTTGCAGCCAGTTTAATGTATTGGAGCCTACAACAGACTGAAGATTCAGATTCACTTCCTTCACCTGCTGACACTGCTACTACCACCACGCCGGAAGCATCCCCAGCACCTTCGGTTTGTGGCGAAGATGAAAGTTCCTCCCTCGGTGGTGAATTCTCCAACTTGAGTGTTGATGATGCTACCTCTGACACAACAGCCTCTTCTTCACAACTTGAGTCTGATGGAATTCCTGCAGGAGATGAGCTGTTGTGA 2085 0.4192 MSKFEGVIVSDQWLQSQFTQVELRSLKSKFVSLKNQNGNVTFGDLPPLMVQLKAFRDMYGEDEIRGILGESGTDFTNDVDFEGFLRAYLNLQSQAIAKQGGRKHSSSFLKETVTTLLHTISESEKACYVTHINSYLGDDPFLQQYLPLDPATNDIFDLAKDGVLLCKLINVAVPGTIDDRAINAKRNPTLWERNENHTLCLNSAKAIGCTVVNIGTQDLVEGRPHLVLGLISQIIKIQLLADLNLKKTPQLVELVDDSQEIEELLNLSPEKVLLKWMNFHLQRGGYQKTVKNFSSDVKDGEAYAYLLNVLAPEHCSPATLDTKDVNDRANLVLDHAERMGCKRYLTSRDIAEGTSNLNLAFVAQLFHHRSGLSTDTKKISYAEMMTDDVQTSREERCFRLWINSLGISTYVNNLFEDVKNGWILLEVLDKIFPGSVNWKQATRPPIKMPFRKVENCNQVIKIGKELRFSLVNVAGNDIVQGNKKLVLALLWQLMRFTILQLLKNLRNHSQGKEISDADILKWANRKVKSTGRTSHIESFKDKSLSSGLFFLELLSAVEPRVVNWNLVTKGESDDEKKLNATYIISVARKLGCSIFLLPEDIMEVNQKMILTLAASLMYWSLQQTEDSDSLPSPADTATTTTPEASPAPSVCGEDESSSLGGEFSNLSVDDATSDTTASSSQLESDGIPAGDELL* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1795 694 MobiDBLite consensus disorder prediction 625 694 - -
Apr9g1795 694 Gene3D - 245 373 IPR036872 -
Apr9g1795 694 Gene3D - 506 618 IPR036872 -
Apr9g1795 694 MobiDBLite consensus disorder prediction 658 685 - -
Apr9g1795 694 ProSiteProfiles Calponin homology (CH) domain profile. 122 239 IPR001715 GO:0005515
Apr9g1795 694 SUPERFAMILY EF-hand 13 95 IPR011992 -
Apr9g1795 694 SUPERFAMILY Calponin-homology domain, CH-domain 120 618 IPR036872 -
Apr9g1795 694 ProSiteProfiles Calponin homology (CH) domain profile. 392 498 IPR001715 GO:0005515
Apr9g1795 694 CDD CH 149 237 IPR001715 GO:0005515
Apr9g1795 694 Gene3D - 118 244 IPR036872 -
Apr9g1795 694 PANTHER FIMBRIN-1 3 685 - -
Apr9g1795 694 CDD CH 268 368 IPR001715 GO:0005515
Apr9g1795 694 ProSiteProfiles Calponin homology (CH) domain profile. 267 370 IPR001715 GO:0005515
Apr9g1795 694 MobiDBLite consensus disorder prediction 625 646 - -
Apr9g1795 694 ProSiteProfiles Calponin homology (CH) domain profile. 513 621 IPR001715 GO:0005515
Apr9g1795 694 ProSitePatterns Actinin-type actin-binding domain signature 2. 470 494 IPR001589 -
Apr9g1795 694 ProSitePatterns Actinin-type actin-binding domain signature 2. 211 235 IPR001589 -
Apr9g1795 694 SMART ch_5 394 496 IPR001715 GO:0005515
Apr9g1795 694 SMART ch_5 515 619 IPR001715 GO:0005515
Apr9g1795 694 SMART ch_5 269 368 IPR001715 GO:0005515
Apr9g1795 694 SMART ch_5 124 237 IPR001715 GO:0005515
Apr9g1795 694 Pfam Calponin homology (CH) domain 268 369 IPR001715 GO:0005515
Apr9g1795 694 Pfam Calponin homology (CH) domain 394 496 IPR001715 GO:0005515
Apr9g1795 694 Pfam Calponin homology (CH) domain 516 618 IPR001715 GO:0005515
Apr9g1795 694 Pfam Calponin homology (CH) domain 152 237 IPR001715 GO:0005515
Apr9g1795 694 Gene3D - 388 505 IPR036872 -
Apr9g1795 694 PANTHER FIMBRIN/PLASTIN 3 685 IPR039959 GO:0051015|GO:0051017
Apr9g1795 694 CDD CH 393 495 IPR001715 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1795 Apr-Chr9 26888463 26895099 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1795 1 685 EF-hand Containing Proteins AT5G55400 70.000 0.0 1001
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1795 - K17275 gmx:100794850 1266.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1795 9 26888463 26895099 Apr9g1795 9 26888463 26895099 ECH