Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0689 ATGTCTAGCTTTGTAGGTGTTCTTGTTTCTGATCAATGGCTTCAAAGCCAGTTCACACAGGTGGAACTTCGAAGCCTGAAATCCAAGTTTATGGCGGTAAGGAATCAAAACGGCAAAGTTACAGTAGGAGATTTGCCAGCTCTAATGGTAAAATTGAAGGCATTCAGTGATATGTTTAAAGAGGAGGAGATTAGAGGAATCTTGGGTGAGTCAGGTGCAGACATGAATGATGAGGTCGATTTTGAAGCCTTTCTTAGGGCATATCTGAATTTGCAAGGTCGGGGAACAGAAAAATTGGGTGGTTCGAATCACTCTTCATCATTCCTCAAGGCCACCACAACCACCCTTCTTCACACTATTATTGAATCAGAGAAGGCATCTTATGTGGCCCATATCAACAGCTATCTTGGGGATGACCCATTTCTGAAGCAATATCTTCCTTTAGATCCATCCACAAATGACCTGTTTGATCTTGTAAAAGATGGAGTTCTTTTATGTAAGCTTATCAACGTTGCAGTGCCAGGGACAATAGATGAACGAGCTATTAACACCAAACGGGTACTAAATCCATGGGAGAGGAATGAAAACCATACCCTTTGCCTCAACTCTGCAAAGGCCATTGGCTGCACGGTGGTGAACATTGGGACACAGGACTTGATTGAAGGAAGACCTCATCTACTACTTGGATTAATTTCTCAAATTATAAAGATCCAACTGTTAGCAGATCTTAATCTTAAGAAGACGCCTCAACTTGTGGAATTGGTGGATGATGGCAATGATGTTGAGGAGCTTATGGGCTTAGCCCCTGAGAAGGTTTTATTGAAATGGATGAATTTCCACCTTAAGAAAGCTGGCTACAAGAAGCCCATTACAAATTTTTCTTCTGATTTGAAGGATGGAGAGGCTTATGCTTACCTGCTTAATGTTCTTGCACCAGAACACTGCAGTCCAGCAACCTTGGACGCAAAGGATCCCACTCATAGGGCAAAGCTGGTACTTGATCATGCAGAGAGAATGGACTGCAAACGATACTTGAGTCCAAAGGACATTGTTGAAGGCTCACCAAATTTAAATCTTGCATTTGTTGCTCAAATATTCCATCAAAGGAGTGGGCTGTCTGCGGACTGTAAAAATATTTCCTTTGCAGAGATGATGACAGATGATGTGCTAATATCTAGAGAAGAAAGATGCTTTAGGCTGTGGATCAACAGTCTTGGAATTGTTACTTATGTCAATAATTTGTTTGAGGATGTGAGAAATGGATGGATACTCTTGGAAGTGCTTGACAAGGTTTCTCCAGGATCTGTTAACTGGAAGCGTGCATCAAAACCTCCCATTAAGATGCCATTCAGAAAAGTAGAGAACTGCAATCAAGTCATAGGGATAGGGAAGCAATTGAAATTTTCCCTTGTGAATGTAGCTGGAGAAGATATTGTACAGGGAAATAAGAAGCTCATACTTGCTTTCCTATGGCAGTTGATGAGATATAATATGCTCCAGCTCCTAAAGAACTTGAGATTCCACTCCCAAGGGAAAGAGATGACTGATGCTGATATCCTGAAATGGGCAAATAACAAAGTGAAGCGCACAGGCAGAACTTCTCAAATGGAGAGTTTCAAGGATAAGAACCTGTCCAATGGAATATTCTTCCTTGATCTTCTCAGTGCTGTGGAGCCAAGGGTTGTCAATTGGAACCTGGTTACTAAGGGTGAAAGTGAGGAAGAGAAGAAGTTGAATGCTACTTACATAATCAGTGTTGCGAGGAAACTTGGGTGTTCTATTTTCTTGTTGCCTGAGGACATCATGGAGGTAAATCAGAAGATGATCCTCACTCTAACAGCGAGTATCATGTACTGGAGTCTGCAGCAACCAGTTGAAGAGTTGGAGACATCTTCATCCCCTGCTGATGCAGCCACTACTGCCAGCACTACTAGCACTACTCCTGATGCATCCCCATCAGCATCAGTGAATGGAGAGGATGAAAGCTCCCTGAGTGGTGAAATCTCGAACTTGATCATTGATGATGCAGCTTCTGATACCACAGTTTCCTCACAGGTTGAAAACGAGGCTCCTGATACCACTACCACAGTTTCCTCTCATATTGAAAACGACGACACCCCTATAGGCGATTGA 2133 0.4252 MSSFVGVLVSDQWLQSQFTQVELRSLKSKFMAVRNQNGKVTVGDLPALMVKLKAFSDMFKEEEIRGILGESGADMNDEVDFEAFLRAYLNLQGRGTEKLGGSNHSSSFLKATTTTLLHTIIESEKASYVAHINSYLGDDPFLKQYLPLDPSTNDLFDLVKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAIGCTVVNIGTQDLIEGRPHLLLGLISQIIKIQLLADLNLKKTPQLVELVDDGNDVEELMGLAPEKVLLKWMNFHLKKAGYKKPITNFSSDLKDGEAYAYLLNVLAPEHCSPATLDAKDPTHRAKLVLDHAERMDCKRYLSPKDIVEGSPNLNLAFVAQIFHQRSGLSADCKNISFAEMMTDDVLISREERCFRLWINSLGIVTYVNNLFEDVRNGWILLEVLDKVSPGSVNWKRASKPPIKMPFRKVENCNQVIGIGKQLKFSLVNVAGEDIVQGNKKLILAFLWQLMRYNMLQLLKNLRFHSQGKEMTDADILKWANNKVKRTGRTSQMESFKDKNLSNGIFFLDLLSAVEPRVVNWNLVTKGESEEEKKLNATYIISVARKLGCSIFLLPEDIMEVNQKMILTLTASIMYWSLQQPVEELETSSSPADAATTASTTSTTPDASPSASVNGEDESSLSGEISNLIIDDAASDTTVSSQVENEAPDTTTTVSSHIENDDTPIGD* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0689 710 SUPERFAMILY EF-hand 12 94 IPR011992 -
Vvi19g0689 710 ProSiteProfiles Calponin homology (CH) domain profile. 513 621 IPR001715 GO:0005515
Vvi19g0689 710 Pfam Calponin homology (CH) domain 145 237 IPR001715 GO:0005515
Vvi19g0689 710 Pfam Calponin homology (CH) domain 395 497 IPR001715 GO:0005515
Vvi19g0689 710 Pfam Calponin homology (CH) domain 268 368 IPR001715 GO:0005515
Vvi19g0689 710 Pfam Calponin homology (CH) domain 516 617 IPR001715 GO:0005515
Vvi19g0689 710 MobiDBLite consensus disorder prediction 629 703 - -
Vvi19g0689 710 FunFam Fimbrin-2 like 118 244 - -
Vvi19g0689 710 CDD CH_AtFIM_like_rpt4 513 621 - -
Vvi19g0689 710 PANTHER FIMBRIN/PLASTIN 1 623 IPR039959 GO:0051015|GO:0051017
Vvi19g0689 710 ProSiteProfiles Calponin homology (CH) domain profile. 122 239 IPR001715 GO:0005515
Vvi19g0689 710 CDD CH_AtFIM_like_rpt1 123 238 - -
Vvi19g0689 710 FunFam Fimbrin-2 isoform A 245 373 - -
Vvi19g0689 710 Gene3D - 123 244 IPR036872 -
Vvi19g0689 710 ProSitePatterns Actinin-type actin-binding domain signature 2. 211 235 IPR001589 -
Vvi19g0689 710 Gene3D - 506 618 IPR036872 -
Vvi19g0689 710 FunFam Fimbrin-2 like 388 505 - -
Vvi19g0689 710 Gene3D - 10 122 - -
Vvi19g0689 710 ProSiteProfiles Calponin homology (CH) domain profile. 267 370 IPR001715 GO:0005515
Vvi19g0689 710 ProSiteProfiles Calponin homology (CH) domain profile. 392 498 IPR001715 GO:0005515
Vvi19g0689 710 MobiDBLite consensus disorder prediction 629 710 - -
Vvi19g0689 710 FunFam Fimbrin-1 isoform A 506 618 - -
Vvi19g0689 710 SMART ch_5 394 496 IPR001715 GO:0005515
Vvi19g0689 710 SMART ch_5 515 619 IPR001715 GO:0005515
Vvi19g0689 710 SMART ch_5 269 368 IPR001715 GO:0005515
Vvi19g0689 710 SMART ch_5 124 237 IPR001715 GO:0005515
Vvi19g0689 710 Gene3D - 245 373 IPR036872 -
Vvi19g0689 710 Gene3D - 388 505 IPR036872 -
Vvi19g0689 710 CDD CH_AtFIM_like_rpt3 391 503 - -
Vvi19g0689 710 CDD CH_AtFIM_like_rpt2 260 367 - -
Vvi19g0689 710 SUPERFAMILY Calponin-homology domain, CH-domain 122 618 IPR036872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0689 Vvi-Chr19 7495128 7500656 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0689 1 690 EF-hand Containing Proteins AT5G55400 71.714 0.0 1018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0689 - K17275 vvi:100248725 1374.38