Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g01962 ATGTCAAATTTTGTGGGCGTTGTTGTCTCCGATCAATGGCTTCAAAGTCAGTTTACGCAGGTTGAACTTCGCAGCCTAAATTCAAAATTTATGGCATTAAAAAATCAGAATGGCAAAGTTATTTACGGAGACTTGCCAACTGTAATGGCCAATTTAAAAGCATTTAAAGAAATGTACACTGAGAAGGAGATTGAGGGGCTATTGGGTGAACACAGCCCTGACTTGAGAGATGAGATTGATTTTGAATCTTTCTTAAGGGTATATTTGAATTTGCAAAGCTTTGCTACATCAAAACAAGGTGTTACAAAGAACTCTTCGTCATTCCTTAAGTCAACCACAACCACCCTTCTCCACACCATCAGTGCATCAGAAAAGGCATCTTATGTTGCTCATATAAACAGCTACCTTGGTGATGACCCGTTTCTGAGTCAATATCTTCCTTTAGACCCAGCTACCGATGATTTAATTGATCTTGCAAAAGATGGAGTACTTCTGTGTAAACTTATCAATGTTGCTGTTCCTGGGACTATAGATGAGCGAGCCATCAATGCCAAAAAAGTTCTCAATCTTTGGGAGAGGAATGAAAACCATACTCTCTGCCTTAATTCTTCCAAGGCTATAGGCTGTACTGTAGTTAACATTGGCACACAGGACCTTGTTGAAGGAAGACCCCATCTTGTTTTAGGGCTGATTTCCCAGATTATAAAGATCCAATTATTGGCAGATCTGAACCTTAAGAAGACTCCTCAGCTTGTTGAATTGGTGGAGGATAGCCAGGAGGTTGAAGAGCTTCTTAGTTTGCCTCCTGAAAAGGTCCTACTAAAGTGGATGAATTTTCATCTCCAGAGAGGAGGGTATGATAAAACTGTTAAAAATTTTTCTTCTGATGTGAAGGATGGAAGAGCTTATGCTTATCTGCTTAATGTCCTCGCTCCTGAACATTGCAATCCATCCACCTTGGATACTAAGGATCCCATCCAAAGGGCAGAACTGGTGCTTGATCATGCAGAAAGAATGGGCTGCAAAAGATACTTGACACCCAAGGACATTGTGGAAGGTTCCTCAAATCTGAATCTTGCATTTGTGGCTCAAATATTTCATCAGAGGAGTGGCTTATCTACGGACAATAAAAGGATATCTTATGCTGAGATGATGACAGATGATGTGCAAACATCTAGAGAAGAGAGATGCTTCAGGTTGTGGATCAATAGTCTTGGAATTGGGACTTATGTGTATAATGTATTTGAGGATGTTAGAAATGGATGGATACTTCTGGAGGTGTTAGACAGGATATCTCCAGGATCGGTTAACTGGAAACATGCAACAAGACCTCCAATTAAGATGCCATTTAGAAAAGTAGAGAACTGCAATCAGGTCATAAAAATTGGGAGACAACTGAGGTTTTCGCTAGTTAATATAGCTGGCAATGACATAGTGCAAGGAAATAAGAAGCTCATTCTTGCCTTCTTGTGGCAATTGATGAGATTCACTATGCTTCAACTACTGAAAAATTTGAGATCTCATTCTCAAGGAAGGGAGATCACTGATGCTGATATCCTGAAATGGGCAAACAGAAAAGTGAAGAGCACTGGGAGAACTTCCCATATAGAGAGTTTTAAGGATAAGAGCTTGTCAAGTGGAATCTTTTTTCTTGAGCTTCTCAGTGCTGTAGAGCCCAGGGTTGTGAATTGGAATCTTGTTACTAAGGGTGCAAGTGATGATGAGAAGAAGTTGAATGCTACCTACATCATCAGTGTGGCTCGAAAGCTAGGTTGTTCCATCTTTTTGTTACCTGAGGATATTATGGAGATTAATCAGAAAATGATTCTCACTCTTGCAGCCAGTATAATGTACTGGAGTCTGCAACAGTCCGGCGAAGATGCAGACTCATTCCCTTCACCAGCTTCCACCATCACCAACAATACTCCTGATGCGTCACCTGCCCCATCAGTTTGCGGCGAAGATGAAATCTCCTCCCTTGGCGGCGAAATCTCCAACTTAAGCATCGATGATGCTGCCTCTGACACATCAGTTTCCTCACAACTTGATTATGAAGGTGCTGAAGTGGATCACCGAAAGTGA 2082 0.4121 MSNFVGVVVSDQWLQSQFTQVELRSLNSKFMALKNQNGKVIYGDLPTVMANLKAFKEMYTEKEIEGLLGEHSPDLRDEIDFESFLRVYLNLQSFATSKQGVTKNSSSFLKSTTTTLLHTISASEKASYVAHINSYLGDDPFLSQYLPLDPATDDLIDLAKDGVLLCKLINVAVPGTIDERAINAKKVLNLWERNENHTLCLNSSKAIGCTVVNIGTQDLVEGRPHLVLGLISQIIKIQLLADLNLKKTPQLVELVEDSQEVEELLSLPPEKVLLKWMNFHLQRGGYDKTVKNFSSDVKDGRAYAYLLNVLAPEHCNPSTLDTKDPIQRAELVLDHAERMGCKRYLTPKDIVEGSSNLNLAFVAQIFHQRSGLSTDNKRISYAEMMTDDVQTSREERCFRLWINSLGIGTYVYNVFEDVRNGWILLEVLDRISPGSVNWKHATRPPIKMPFRKVENCNQVIKIGRQLRFSLVNIAGNDIVQGNKKLILAFLWQLMRFTMLQLLKNLRSHSQGREITDADILKWANRKVKSTGRTSHIESFKDKSLSSGIFFLELLSAVEPRVVNWNLVTKGASDDEKKLNATYIISVARKLGCSIFLLPEDIMEINQKMILTLAASIMYWSLQQSGEDADSFPSPASTITNNTPDASPAPSVCGEDEISSLGGEISNLSIDDAASDTSVSSQLDYEGAEVDHRK 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g01962 693 MobiDBLite consensus disorder prediction 629 658 - -
Accr3g01962 693 FunFam Fimbrin-1 isoform A 506 618 - -
Accr3g01962 693 Gene3D - 388 505 IPR036872 -
Accr3g01962 693 CDD CH_AtFIM_like_rpt2 259 367 - -
Accr3g01962 693 ProSiteProfiles Calponin homology (CH) domain profile. 122 239 IPR001715 GO:0005515
Accr3g01962 693 ProSiteProfiles Calponin homology (CH) domain profile. 392 498 IPR001715 GO:0005515
Accr3g01962 693 ProSiteProfiles Calponin homology (CH) domain profile. 267 370 IPR001715 GO:0005515
Accr3g01962 693 CDD CH_AtFIM_like_rpt4 513 621 - -
Accr3g01962 693 Gene3D - 245 373 IPR036872 -
Accr3g01962 693 FunFam Fimbrin-2 isoform A 245 373 - -
Accr3g01962 693 CDD CH_AtFIM_like_rpt1 123 238 - -
Accr3g01962 693 ProSitePatterns Actinin-type actin-binding domain signature 2. 211 235 IPR001589 -
Accr3g01962 693 SUPERFAMILY Calponin-homology domain, CH-domain 121 618 IPR036872 -
Accr3g01962 693 CDD CH_AtFIM_like_rpt3 390 503 - -
Accr3g01962 693 PANTHER FIMBRIN/PLASTIN 1 623 IPR039959 GO:0051015|GO:0051017
Accr3g01962 693 MobiDBLite consensus disorder prediction 629 647 - -
Accr3g01962 693 FunFam Fimbrin-2 like 118 244 - -
Accr3g01962 693 Gene3D - 119 244 IPR036872 -
Accr3g01962 693 FunFam Fimbrin-2 like 388 505 - -
Accr3g01962 693 Pfam Calponin homology (CH) domain 150 237 IPR001715 GO:0005515
Accr3g01962 693 Pfam Calponin homology (CH) domain 516 617 IPR001715 GO:0005515
Accr3g01962 693 Pfam Calponin homology (CH) domain 394 496 IPR001715 GO:0005515
Accr3g01962 693 Pfam Calponin homology (CH) domain 268 368 IPR001715 GO:0005515
Accr3g01962 693 SMART ch_5 394 496 IPR001715 GO:0005515
Accr3g01962 693 SMART ch_5 269 368 IPR001715 GO:0005515
Accr3g01962 693 SMART ch_5 124 237 IPR001715 GO:0005515
Accr3g01962 693 SMART ch_5 515 619 IPR001715 GO:0005515
Accr3g01962 693 Gene3D - 506 618 IPR036872 -
Accr3g01962 693 MobiDBLite consensus disorder prediction 672 693 - -
Accr3g01962 693 ProSiteProfiles Calponin homology (CH) domain profile. 513 621 IPR001715 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g01962 Accr-Chr3 28644907 28651235 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g01962 1 680 EF-hand Containing Proteins AT5G55400 71.182 0.0 1012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g01962 K17275 - mnt:21397169 1154.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g01962 3 28644907 28651235 Accr3g01962 3 28644907 28651235 ECH