Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1292 ATGCTGAGTTATAGCCGTTCACCCCTTCTAATTTCCGGGGTGAAAAAGGATATGGCATCTTCAGAGGATGAGGTTGAGGATCATCCACAATCTGTGTCAAATTACCATTTTGTGGATCAAAAGGATGTGCCTGTGTCGTTTTCTGTATTGCGAATTCAATGGACTGAATCTGAGAATACAGATGGCAAAAATGAGGAAGTATTCCTTCATGGGGTTGTAGATAATGGGCTGCAGAAATTATTTATGCAAGTCGTTGCCTGGAAGTTTGATATTTCCAATGCAAAACCTGAGATATCAGTATTATCAAAGGATAGACGATGGATCAAACTTCAGAAGCCTAGGAAGAGCTTTGAGGATACCATAAGGACAACTATAACTACTGTTCACTTCCTACATTATGTGGGGAAAAATCCTGAAACTTCTGCTAAATCTGTGTGGGATTACTTGTCTAAGGTTTTGAGCTATTATGAGGTTAGGCCTTCACAAAACGATTTGTTGAACCACTTGCCTTTAATTGGTGAAGCTGTTAAAAGGCATTCCATCTTAGCTAAGTCCAAGCTTTTACTCATGGTTCTTGAGAACCCGTGGGATGTGAAATTGTCAGATGAGGGGGCTAATAATTTAGCAAGGCCTGCATTTATAGTTGACAATATTGACGATGATACAATTGATGAAGCTGCTGAAGAGTCAGATGAAGATGATGACTTGTTTGATTCTGTTTGTGTATTATGTGACAATGGTGGTAAATTGTTGTGTTGTGATGGAAAGTGCATGAGGTCATTCCATGCTACAGAGGAGGATGGTGCAGAATCTATCTGTGACTCTCTTGGTCTTACTCAGAAGGAAGTTGATGAGGTCCAGAACTTTTATTGCAAAAATTGTGAGTGTAACCAGCATCAGTGCTTTGCATGTGGCAAGTTAGGCTCCTCTGATACATCTTCTGGTGCTGAGGACACTAGACCTGATAAGTTGATAACACTGGTCTTTCGCTGTGAAAATGCAACTTGTGGCCGCTTTTACCATCCACAATGTGTTGCAAAGTTACGTCACCGGGAAGATGAGTTTGCAGCAAAGGAACTTGAGAAAATTGTTGCCGATGGCGGAAGTTTTACGTGTCCTATTCATTTTTGCTGCATCTGTAAACAAAGAGAAAATAAGAAGGAACATGAATTGCAATTTGCCATTTGTAGGCGTTGTCCTAAATCATATCACCGCAAATGTTTGCCAAGGAAGATTGCTTTTGAAGACATAGAGGAAGAAGGTATTATCACAAGGGCTTGGGAAGGCCTATTACCGTCTAACCGCATACTTATATATTGTTTAAAACATGAGATTGATGATGAACTTGGAACTCCTATTAGAGATCATATCAGATTCCCCAAGATTAATGTTCAAGAAATTAATTCTTCCTTAGAGGAAGAGACAAAGCCTCCAACACAAGATAGAGTTATATTAAATAAAAGCAATGTTGACCTTGATGATTCTTCTTGCAAAAGAAGTACTCCTAAAGAATCTGAACTGACTGAAAAAGCATCTTCTGGTAAAGTTGGTATAAAGAAAAAGTCAGAAAAGATAATTTCTGGATCAAATATCTTAAGGAAACGCAAAGCAAATGGCACACCAGGAAGGCACTTGAATGTGAAAAAGAAGTCAATCTCAAAGGAAACTGAAAAGCTGGATGGTGAGGTGAGCCAATCCTCATTGGGCAAAAAATTATATGCTTTAATGACTAAGAGTCCTGGGAAAATTGAGCCTGGGAAACATGATGACAATGTAGCTAACAAGACCCTGCCTGTGAAGCCTACTAAAAATGAGCTGAGTAGTTCATTGCCTCAGCTAGATGCGGAGTCAGAGAGGAGAATGTTGGCTTTGTTCAAAGAAGCTGCATCATCAATCACTTTGGACGATGTCTTAGAAAAGCACAAAGTTGCTTCTACTCATACTTACTCTTTACGAAATGTTGTGGAGAAGACCATTACTGCTGGGAAGTTGGAAGGCTCAGTTGATGCTGTTCGAACAGCTCTAAGGAAGCTAGAGGAAGGGCGAAGCATTGAGGATTCAGAAGCTGTTTGTGACCCTGATGTTTTGAACCAGATATTTAAATGGAGGGACAAGTTGAAAGTGTATCTTGCACCTTTTTTGTACGGTAATCGCTACACATCCTATGGCCGTCATTTTACACAAGTGGAAAAACTGGAAGGGATTGTTGATAGACTCCATTGGTATGTCCAAAATGGTGATACAATTGTGGACTTCTGTTGTGGTGCTAATGATTTTAGCATTCTGATGAAGAAAAAGCTTGAAGAAACTGGGAAGAAATGCTTTTTCAAAAACTATGATTTACTTCCAACGAAGAATGATTTTAATTTTGAAATGAGGGACTGGATGACTGTCCAACTGAAGGAGTTGCCTAAGGGATCACAGTTGATTATGGGACTGAATCCCCCCTTTGGTGTTAAAGCGGTTTTGGCTAACAAGTTTATAGAGAAGGCCCTTGAGTTTCAACCAAAGCTTCTTATTCTTGTTGTTCCACCAGAGACACAGAGGCTAGATAAAAAACGTCCACCTTATGATCTTCTCTGGGAGGATGAGAAATTTCTATCAGGCAAGTCATTTTATTTGCCTGGATCAGTTGATGTTAATGACCGGCAAATGGAACAGTGGAATGTGAGGCCACCTCTACTTTATCTTTGGAGCCGTTGTGATTGGACTGATAAACATAAGGCCATAGCTCAAGAGCATGGTCATATGCCCAGCCAACATGATGCATTAATGGAAAAGAACTTTGATGGTAAAGTGTCACCTGCTGATCATCCTATGGATGATAATCATGGTGACAATCTCAGGCTGGGTCATGACCTTTTGAAGCCAGATGATGACCCTGAAGGTGGTCAGGCTTCTAGGAATGAATGTCAGAAAGAAAACTTGTCTCACGGTAATTTTGACGATGAGAATCAAGTGGTACATGAACAAAGCATAAGCAAGTCTGACAAGACATCATGGAAGAGGAAACATACTGAAGAAAATGATGGAATAGGACGTGACGTAGTTTCACCAGCCAACAAACAGGCAATGAATGAAAGCATGAGCATGTCTGCCATGACATCACAGAAGAAGAAACATACTGAAGAAAATGTTGGAATAGGACGTGATGTAGTTTCACCAGCCAACAAACAGGCAGTGAATGAAAGCATAAGCAAGTCTGATAAGACATCATGGAAGAGGAAACATACTGAAGAAAATGATGGACTAGGACGTGATGTAGTTTCACCAGCCAGCAAACAGGCAGTGAATGATATGCATGACAGGGTGCTTCCGCACAGTCAACAACCCCATGTATGTGATGGCAGATCCTTGGCTGAAGGTTTTCAGTCCAAGCCTGTTATCTTCTCTTCACATGTTGAGGTTAGTGATAATGCTTCCCGGCATTATGAGTCCACCTCTTGCTCAAACAAGGAGTTTGGAGCAGCCTATGGTGGGACCCAACATTGGCCAAGTGTAGCTACTTCTCTTTCTGATTTTGGAGATAGGAATTTGGAGGAACATCATCGCAGCCTTCCGGGAGGCAGCTCCAGTAGCTTTGGATATAGTCCCTACACCATGGAGGAAGGGAAGTACTGGGGGCAATCGGATTTAAGGCAACAGATTCGCATGTATGGCATGCAGGAACCTGATTTTATGAGACGTAGCTATCTATCTGGTGAAAATCCTGCTTATGGTCCTATGGGAACTAGTTATGGTCAGCTTGGTTCGGATCCTAGGTCATCTTACATAAATACTTCAGCTATGCAACGTTATGCACCTCGCTTGGATGAATCAAACCATGTCAGGATGAGGAATTTAGGGCCAGAACCCCCAACAGTTGGTAGAAATGATGACAACTTCGGACGTGGTGTGCCGCCACAACCTGGATATGGCAGTGGACTGCAGGGTTTTTCACCCAGTCCTTATCGTGCATATTCCCGCCGTAACTCTGCAGGATGGCTCAATGAGTAG 3996 0.4157 MLSYSRSPLLISGVKKDMASSEDEVEDHPQSVSNYHFVDQKDVPVSFSVLRIQWTESENTDGKNEEVFLHGVVDNGLQKLFMQVVAWKFDISNAKPEISVLSKDRRWIKLQKPRKSFEDTIRTTITTVHFLHYVGKNPETSAKSVWDYLSKVLSYYEVRPSQNDLLNHLPLIGEAVKRHSILAKSKLLLMVLENPWDVKLSDEGANNLARPAFIVDNIDDDTIDEAAEESDEDDDLFDSVCVLCDNGGKLLCCDGKCMRSFHATEEDGAESICDSLGLTQKEVDEVQNFYCKNCECNQHQCFACGKLGSSDTSSGAEDTRPDKLITLVFRCENATCGRFYHPQCVAKLRHREDEFAAKELEKIVADGGSFTCPIHFCCICKQRENKKEHELQFAICRRCPKSYHRKCLPRKIAFEDIEEEGIITRAWEGLLPSNRILIYCLKHEIDDELGTPIRDHIRFPKINVQEINSSLEEETKPPTQDRVILNKSNVDLDDSSCKRSTPKESELTEKASSGKVGIKKKSEKIISGSNILRKRKANGTPGRHLNVKKKSISKETEKLDGEVSQSSLGKKLYALMTKSPGKIEPGKHDDNVANKTLPVKPTKNELSSSLPQLDAESERRMLALFKEAASSITLDDVLEKHKVASTHTYSLRNVVEKTITAGKLEGSVDAVRTALRKLEEGRSIEDSEAVCDPDVLNQIFKWRDKLKVYLAPFLYGNRYTSYGRHFTQVEKLEGIVDRLHWYVQNGDTIVDFCCGANDFSILMKKKLEETGKKCFFKNYDLLPTKNDFNFEMRDWMTVQLKELPKGSQLIMGLNPPFGVKAVLANKFIEKALEFQPKLLILVVPPETQRLDKKRPPYDLLWEDEKFLSGKSFYLPGSVDVNDRQMEQWNVRPPLLYLWSRCDWTDKHKAIAQEHGHMPSQHDALMEKNFDGKVSPADHPMDDNHGDNLRLGHDLLKPDDDPEGGQASRNECQKENLSHGNFDDENQVVHEQSISKSDKTSWKRKHTEENDGIGRDVVSPANKQAMNESMSMSAMTSQKKKHTEENVGIGRDVVSPANKQAVNESISKSDKTSWKRKHTEENDGLGRDVVSPASKQAVNDMHDRVLPHSQQPHVCDGRSLAEGFQSKPVIFSSHVEVSDNASRHYESTSCSNKEFGAAYGGTQHWPSVATSLSDFGDRNLEEHHRSLPGGSSSSFGYSPYTMEEGKYWGQSDLRQQIRMYGMQEPDFMRRSYLSGENPAYGPMGTSYGQLGSDPRSSYINTSAMQRYAPRLDESNHVRMRNLGPEPPTVGRNDDNFGRGVPPQPGYGSGLQGFSPSPYRAYSRRNSAGWLNE 1331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1292 1331 MobiDBLite consensus disorder prediction 1057 1087 - -
Dere05g1292 1331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 237 298 IPR013083 -
Dere05g1292 1331 MobiDBLite consensus disorder prediction 1271 1331 - -
Dere05g1292 1331 Pfam Cytosine specific DNA methyltransferase replication foci domain 30 154 IPR022702 -
Dere05g1292 1331 SMART PHD_3 377 444 IPR001965 -
Dere05g1292 1331 SMART PHD_3 240 295 IPR001965 -
Dere05g1292 1331 SMART PHD_3 300 376 IPR001965 -
Dere05g1292 1331 CDD PHD2_NSD 300 375 - -
Dere05g1292 1331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 299 425 IPR013083 -
Dere05g1292 1331 MobiDBLite consensus disorder prediction 975 1012 - -
Dere05g1292 1331 MobiDBLite consensus disorder prediction 930 1018 - -
Dere05g1292 1331 MobiDBLite consensus disorder prediction 1068 1084 - -
Dere05g1292 1331 MobiDBLite consensus disorder prediction 930 967 - -
Dere05g1292 1331 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 24 925 - -
Dere05g1292 1331 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 713 825 IPR029063 -
Dere05g1292 1331 MobiDBLite consensus disorder prediction 1317 1331 - -
Dere05g1292 1331 CDD PHD3_NSD 376 409 - -
Dere05g1292 1331 MobiDBLite consensus disorder prediction 493 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1292 Dere-ChrDere05 21126542 21142794 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1292 05 21126542 21142794 Dere05g1292 05 21126542 21142794 ECH