Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00239 ATGTCAAAATTTGAGGGTGTTATTGTCTCCGATCAATGGCTTCAGAGTCAGTTTACACAGGTCGAACTTCGCACCCTGAAATCAAAGTTTGTCTCCTTGAAGAATCAGAATGGTAAAGTTACATTTAGAGATTTACCATCTTTAGTGGTGAAGCTAAAGGCATTCGCAGATATGTATAGTGAAGACGAGATTAAGGCGATCTTGTGTGAATCCGACACTGACTTGACTAATGATGTTGATTTCGAATCCTTCTTAAGGGTATATTTGAATTTGCAAAGTCAAGCTACGGCGAAACAAGGTGGCAGGAGGCATTCATCGTCATTCCTTAAGGAAAGTATAACTACCCTTCTTCACACAATTAGTGAATCGGAAAAAGGCTGTTATGTTGCTCACATAAACAGCTACCTTGGTGATGATCCATTTTTGGAGCAATATCTTCCATTGGACCCGGCTACTAATGATCTATTCGATCTTGCAAAAGACGGCGTTCTTCTATGTAAGCTTATAAATGTTGCTGTGCCTGGGACTATAGATGAGCGAGCCATCAACACGAAACGAAAATTAAGTCTTTGGGAGAGAAATGAGAACCATACTCTATGCCTCAATTCTGCAAAGGCTATTGGCTGCACAGTGGTCAACATTGGCACCCAGGATTTAGTGGAAGGACGACCTCATCTTGTTCTTGGGTTGATTTCCCAAATCATAAAGATCCAGCTTTTGGCTGATCTGAACCTCAAGAAGACACCTCAGCTTGTAGAATTGGTTGATGATAGCCAGCAAGGAGGTTACCATAAAACTGTGAAGAATTTTTCTTCGGATGTTAAGGATGGAGAAGCTTATGCTTATCTTCTTAATGTTCTTGCACCTGAACATGGCAGTAGATCCACCTTGGATACCAAGGATACCAATGAAAGGGCAAATATGGTCCTCGAACATGCAGAGAAAATTGGCTGCAAACGATACTTGTCCCCGAAGGACATTGAAGAGGGATCCTCAAATCTGAATCTTGCATTTGTTGCGCAACTGTTTCATCATAGGAGTGGCCTATCTACAGACATTAAAAAGATGTCATATGCTAAGATGATGACAATGGATGATGTACAAACATCTAGAGAAGAGAGATGCTTCCGGCTATGGATAAATAGTCTTGGCATAGCTACTCACATAAATAGTCTATTTGAAGATGTCCGAAATGGATGGGTACTTTTGGAAGTTCTAGACAAGATATTTCCAGGAACAGTAAACTGGAAACATGCAACAAAACCTCCAATTAAGATGCCATTCAGAAAAGTAGAAAACTGCAATCAGGTCATTAAAATTGCTAAACAACTGCGATTCTCGCTTGTCAATGTAGCCGGAAATGACATCGTGCAAGGAAATAAGAAGCTCATTCTTGCTTTATTGTGGCAGTTGATGAGATTCACAATGCTTCAACTGTTAAAAAATTTGAGATCTCACTCACAAGGCAAGGAGATCACTGATGCCGATATTCTTAAATGGACAAACAGAAAAGTGAAGAGCACTGGCAGAACTTCCCAGATTGATAGCTTCAAGGACAAGAGTTTGTCAAGTGGAATATTTTTCCTTGAGCTTCTCAGTGCTGTAGAGCCTAGGGTTGTTAACTGGAACCTGGTCACCAAGGGTGAAAGCGATGACGAGAAGAAACTGAACGCCACCTATATAATCAGTGTAGCGAGAAAACTTGGTTGTTCAATCTTTTTGTTACCGGAGGATATTATGGAGGTTAATCAGAAGATGATTCTCACTCTCGCAGCCAGTATAATGTATTGGAGCTTGCAACAACAAGGTGAAGATGCACTGGATTCATTTCCTTCGCCTGCTGGTACTGCTACGACCACCACGCCGGAAGCTTCCCCAGCTCCATCGGTTTGCGGCGAAGACGAGAGTTCTTCCCTTGGTGGTGAACTCTCCAACTTGAGTGTTGATGATGCCACATCTGACACAACAGTGTCCTCACAACTTGAGTCTGATGAGCTATGA 2001 0.4173 MSKFEGVIVSDQWLQSQFTQVELRTLKSKFVSLKNQNGKVTFRDLPSLVVKLKAFADMYSEDEIKAILCESDTDLTNDVDFESFLRVYLNLQSQATAKQGGRRHSSSFLKESITTLLHTISESEKGCYVAHINSYLGDDPFLEQYLPLDPATNDLFDLAKDGVLLCKLINVAVPGTIDERAINTKRKLSLWERNENHTLCLNSAKAIGCTVVNIGTQDLVEGRPHLVLGLISQIIKIQLLADLNLKKTPQLVELVDDSQQGGYHKTVKNFSSDVKDGEAYAYLLNVLAPEHGSRSTLDTKDTNERANMVLEHAEKIGCKRYLSPKDIEEGSSNLNLAFVAQLFHHRSGLSTDIKKMSYAKMMTMDDVQTSREERCFRLWINSLGIATHINSLFEDVRNGWVLLEVLDKIFPGTVNWKHATKPPIKMPFRKVENCNQVIKIAKQLRFSLVNVAGNDIVQGNKKLILALLWQLMRFTMLQLLKNLRSHSQGKEITDADILKWTNRKVKSTGRTSQIDSFKDKSLSSGIFFLELLSAVEPRVVNWNLVTKGESDDEKKLNATYIISVARKLGCSIFLLPEDIMEVNQKMILTLAASIMYWSLQQQGEDALDSFPSPAGTATTTTPEASPAPSVCGEDESSSLGGELSNLSVDDATSDTTVSSQLESDEL 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00239 666 PANTHER FIMBRIN-1 3 661 - -
Aip07g00239 666 SMART ch_5 250 345 IPR001715 GO:0005515
Aip07g00239 666 SMART ch_5 124 237 IPR001715 GO:0005515
Aip07g00239 666 SMART ch_5 493 597 IPR001715 GO:0005515
Aip07g00239 666 SMART ch_5 372 474 IPR001715 GO:0005515
Aip07g00239 666 CDD CH 261 345 IPR001715 GO:0005515
Aip07g00239 666 SUPERFAMILY Calponin-homology domain, CH-domain 121 596 IPR036872 -
Aip07g00239 666 ProSitePatterns Actinin-type actin-binding domain signature 2. 211 235 IPR001589 -
Aip07g00239 666 CDD CH 371 473 IPR001715 GO:0005515
Aip07g00239 666 Gene3D - 484 596 IPR036872 -
Aip07g00239 666 Gene3D - 118 244 IPR036872 -
Aip07g00239 666 SUPERFAMILY EF-hand 12 94 IPR011992 -
Aip07g00239 666 MobiDBLite consensus disorder prediction 638 660 - -
Aip07g00239 666 CDD CH 149 237 IPR001715 GO:0005515
Aip07g00239 666 Gene3D - 7 102 - -
Aip07g00239 666 Gene3D - 245 350 IPR036872 -
Aip07g00239 666 Pfam Calponin homology (CH) domain 261 346 IPR001715 GO:0005515
Aip07g00239 666 Pfam Calponin homology (CH) domain 372 474 IPR001715 GO:0005515
Aip07g00239 666 Pfam Calponin homology (CH) domain 151 237 IPR001715 GO:0005515
Aip07g00239 666 Pfam Calponin homology (CH) domain 494 595 IPR001715 GO:0005515
Aip07g00239 666 ProSitePatterns Actinin-type actin-binding domain signature 2. 448 472 IPR001589 -
Aip07g00239 666 ProSiteProfiles Calponin homology (CH) domain profile. 122 239 IPR001715 GO:0005515
Aip07g00239 666 MobiDBLite consensus disorder prediction 607 666 - -
Aip07g00239 666 ProSiteProfiles Calponin homology (CH) domain profile. 245 347 IPR001715 GO:0005515
Aip07g00239 666 PANTHER FIMBRIN/PLASTIN 3 661 IPR039959 GO:0051015|GO:0051017
Aip07g00239 666 ProSiteProfiles Calponin homology (CH) domain profile. 370 476 IPR001715 GO:0005515
Aip07g00239 666 Gene3D - 366 483 IPR036872 -
Aip07g00239 666 ProSiteProfiles Calponin homology (CH) domain profile. 491 599 IPR001715 GO:0005515
Aip07g00239 666 MobiDBLite consensus disorder prediction 607 626 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g00239 Aip-Chr7 2049814 2053574 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g00239 1 666 EF-hand Containing Proteins AT5G55400 67.330 0.0 944
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00239 K17275 - gmx:100794850 1141.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g00239 07 2049814 2053574 Aip07g00239 07 2049814 2053574 ECH