Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00198 ATGTCTAAATTCGAAGGTGTTATTGTCTCCGATCAATGGCTTCAAAGCCAATTCACGCAGGTTGAGCTTCGCAGCCTGAAATCAAAATTTGTCAATCTAAAGAATCAGAATGGTAAAGTTACATTTGGAGATTTGCCAGCTTTGATGGTGAAGCTAAACGCGTTCAGAGACATGTATAACGAGGATGAGATTAGGGGGATATTGGGTGAACCAGGCACTGATGACATTGATTTTGAAATCTTCTTAAAGGCATATTTGAATTTGCAAAGCCAAGTTACTGCAAAACAAGGTGGTAGGAGGCACTCCTCGTCATTTCTCAAGGAAACTGTGACCACCCTTCTTCACACAATCAGTGAATCAGAAAAGGCCTGTTATGTTGCCCACATAAACAGCTATCTTGGTGATGATCCATTTTTGAAGCAATATCTTCCATTGAACCCAGCTTCAAATGATATATTTGATCTTGCAAAAGATGGCGTTCTTCTGTGTAAGCTCATCAATGTTGCTGTGCCTGGGACTATAGATGAGCGAGCCATCAATTGCAAACGCAATCCCAGTCTTTGGGAGGTCAACGAGAACCATACTCTATGCCTCAATTCCGCCAAGGCTATTGGCTGCACAGTGGTTAACATTGGTGCACAGGATTTAGTTGAAGGAAGACCTTATCTTGTAGTAGGTTTGATTTCCCAAATTATAAAGATTCAGCTGCTGGCAGATCTCAACCTTAAGAAGACACCTCAACTTATGGAATTGGTTGATGACAGTGAGGAGATCGAAGAGCTTCTTAGTTTGTCTCCCGAAAAGGTTCTTCTAAAATGGATGAATTTTCATCTCCAGAGAGCAGGATACGAGAAAACTGTCAGAAATTTTTCTTCTGATGTTAAGGATGGAGAGGCTTATGCTTATCTGCTGAATGTCCTTGCTCCTGAACATTGCAGTCCAGCCACCTTAGATACCAAGGATCCCACTGAAAGGGCAAATTTGGTTATTGATCATGCAGAGAGAATGGGCTGCAAAAGATACTTGACCCCAAGGGATGTTGCCGAGGGTACTTCGAATTTGAATCTTGCATTTGTTGCACAACTGTTTCATCACAGGAGTGGTCTATCTACAGACACTAAAAAGATTTCCTATGCTGAGATGATAACAGATGATGTGCAAACATCTAGAGAAGAGAGATGCTTCCGAATGTGGATCAATAGTCTTGGAATTTCTACACATGTAAATAATCTATTTGAGGATGTCAGAAATGGATGGGTACTTTTAGAGGTGTTAGACAAGATTTTTCCTGGATCTATTAACTGGAAACGGGCGACAAGACCTCCAATTAGAATGCCATTCAGAAAAGTAGAGAACTGCAATCAGGTCATAGAAGTTGGTACACAACTGAGATTCTCACTAGTCAATGTAGCTGGCAATGACATTGTGCAAGGAAATAAGAAGCTTATTCTTGCTTTATTGTGGCAGCTGATGAGGTTCACTATGCTTCAACTGTTGAGAAATTTGAGATCTCATTCCCAAGGAAAGGAGATCAGGGATGCAGATATCCTGCATTGGGCAAACAAAAAAGTAAAGAACTCTGGCAGAACTTCTCACATAGAGAGCTTCAAGGACAAGAGCTTGTCAAATGGACTCTTTTTCCTTGAGCTTCTGAGTGCTGTTGAGCCCCGAGTTGTCAATTGGAACCTTGTCACCAAGGGTGGAAGTGATGATGAGAAGAGGTTGAATGCCACCTATACAATCAGTGTTGCACGAAAGCTTGGTTGTTCCATTTTTTTGTTACCTGAGGATATTATGGAGGTTAACCAGAAGATGATTCTAACTCTTACAGCTAGTATAATGTATTGGAGCCTGCAGCAACAGACTGAAGATCCAGATTCGTTTCCTTCACCTGCCAACACTACCACCACCACACCTGAAGCATCCCCAGCACCTTCTGTTTGTGGTGAAGATGAAAGTTCCTCCATCGGCGGCGAATTCTCCAACTTGAGTGTCGACGACACCACCTCCGACAGCACAGCCTCTTCACAACCTGAGTGTGATGGTGTTTCTGCAGCAGATGAGCTTTTGTGA 2073 0.4231 MSKFEGVIVSDQWLQSQFTQVELRSLKSKFVNLKNQNGKVTFGDLPALMVKLNAFRDMYNEDEIRGILGEPGTDDIDFEIFLKAYLNLQSQVTAKQGGRRHSSSFLKETVTTLLHTISESEKACYVAHINSYLGDDPFLKQYLPLNPASNDIFDLAKDGVLLCKLINVAVPGTIDERAINCKRNPSLWEVNENHTLCLNSAKAIGCTVVNIGAQDLVEGRPYLVVGLISQIIKIQLLADLNLKKTPQLMELVDDSEEIEELLSLSPEKVLLKWMNFHLQRAGYEKTVRNFSSDVKDGEAYAYLLNVLAPEHCSPATLDTKDPTERANLVIDHAERMGCKRYLTPRDVAEGTSNLNLAFVAQLFHHRSGLSTDTKKISYAEMITDDVQTSREERCFRMWINSLGISTHVNNLFEDVRNGWVLLEVLDKIFPGSINWKRATRPPIRMPFRKVENCNQVIEVGTQLRFSLVNVAGNDIVQGNKKLILALLWQLMRFTMLQLLRNLRSHSQGKEIRDADILHWANKKVKNSGRTSHIESFKDKSLSNGLFFLELLSAVEPRVVNWNLVTKGGSDDEKRLNATYTISVARKLGCSIFLLPEDIMEVNQKMILTLTASIMYWSLQQQTEDPDSFPSPANTTTTTPEASPAPSVCGEDESSSIGGEFSNLSVDDTTSDSTASSQPECDGVSAADELL 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00198 690 Gene3D - 385 502 IPR036872 -
Phco3g00198 690 ProSiteProfiles Calponin homology (CH) domain profile. 264 367 IPR001715 GO:0005515
Phco3g00198 690 SUPERFAMILY Calponin-homology domain, CH-domain 117 615 IPR036872 -
Phco3g00198 690 FunFam Fimbrin-2 like 385 502 - -
Phco3g00198 690 ProSiteProfiles Calponin homology (CH) domain profile. 510 618 IPR001715 GO:0005515
Phco3g00198 690 CDD CH_AtFIM_like_rpt4 510 618 - -
Phco3g00198 690 ProSiteProfiles Calponin homology (CH) domain profile. 119 236 IPR001715 GO:0005515
Phco3g00198 690 CDD CH_AtFIM_like_rpt3 387 500 - -
Phco3g00198 690 PANTHER FIMBRIN/PLASTIN 1 621 IPR039959 GO:0051015|GO:0051017
Phco3g00198 690 SMART ch_5 266 365 IPR001715 GO:0005515
Phco3g00198 690 SMART ch_5 391 493 IPR001715 GO:0005515
Phco3g00198 690 SMART ch_5 121 234 IPR001715 GO:0005515
Phco3g00198 690 SMART ch_5 512 616 IPR001715 GO:0005515
Phco3g00198 690 Gene3D - 110 240 IPR036872 -
Phco3g00198 690 FunFam Fimbrin-2 like 115 241 - -
Phco3g00198 690 CDD CH_AtFIM_like_rpt2 256 364 - -
Phco3g00198 690 MobiDBLite consensus disorder prediction 622 643 - -
Phco3g00198 690 FunFam Fimbrin-1 isoform A 503 615 - -
Phco3g00198 690 FunFam Fimbrin-2 isoform A 242 370 - -
Phco3g00198 690 ProSitePatterns Actinin-type actin-binding domain signature 2. 467 491 IPR001589 -
Phco3g00198 690 MobiDBLite consensus disorder prediction 622 690 - -
Phco3g00198 690 Gene3D - 242 370 IPR036872 -
Phco3g00198 690 ProSiteProfiles Calponin homology (CH) domain profile. 389 495 IPR001715 GO:0005515
Phco3g00198 690 SUPERFAMILY EF-hand 12 92 IPR011992 -
Phco3g00198 690 Gene3D - 503 615 IPR036872 -
Phco3g00198 690 Pfam Calponin homology (CH) domain 265 366 IPR001715 GO:0005515
Phco3g00198 690 Pfam Calponin homology (CH) domain 150 234 IPR001715 GO:0005515
Phco3g00198 690 Pfam Calponin homology (CH) domain 513 614 IPR001715 GO:0005515
Phco3g00198 690 Pfam Calponin homology (CH) domain 392 493 IPR001715 GO:0005515
Phco3g00198 690 MobiDBLite consensus disorder prediction 655 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00198 Phco-Chr3 1459128 1464119 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00198 3 1459128 1464119 Phco3g00198 3 1459128 1464119 ECH