Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01832 ATGCATTCAGAGACACGTACGGTGAGGATGAGATTAGGGGGATCTTGGGCTGAATCAGGCACTGATTTTACCAATGACATTGATTTTGAAGCATTTTTAAAGGCATATTTGAATTTGCAAAGCCAAGCTACTGCAAAACAAGGTGGTAGGAGGCACTCCTCGTCATTCCTCAAGGAAACTGTGACCACCCTTCTTCACACAATCAGTGAATCGGAAAAGGCCTGCTATGTTGCCCACATAAACAGCTACCTTGGTGATGATCCATTTTTGAAGCAATGTCTTCCTTTGGACCCAGCTACAAATGATATATTTGATCTTGCAAAAGATGGCGTTCTTCTGTGTAAGCTTATCAATGTTGCTGTGCCTGGGACTATAGATGAGCGAGCCATCAATTGCAAACGAAATCCTAGTCTTTGGGAGGTAAATGAGAACCATACTCTATGCCTCAATTCTGCCAAGGCTATTGGCTGCACGGTGGTTAACATTGGCGCACAGGACTTAGTTGAAGGAAGACCTCATCTTGTTCTAGGGTTGATTTCCCAAATCATAAAGATTCAGCTGCTGGCTGATCTCAACCTTAAGAAGACACCTCAGCTTGTGGAATTGGTTGATGACAACGAGGAGATCGAAGAGCTTCTTAATTTGTCTCCCGAAAAGGTTCTACTAAAATGGATGAATTTTCATCTCCAGAGAGCAGGTTATGAGAAAACTGTCAGAAATTTTTCTTCTGATGTCAAGGATGGAGAGGCTTATGCTTATCTACTTAATGTCCTTGCTCCTGAACATTGCAGTCCGGCCACCTTGGATACCAAGGATGCCAATGAAAGGGCAAATCTGGTTCTTGATCATGCAGAGAGAATGGGCTGCAAAAGATACTTGACCCCAAGGGATGTTGCAGAGGGTACTTCAAATTTGAATCTTGCATTTGTTGCACAATTGTTTCATCATAGGAGTGGTCTATCTACAGACACTAAAAAGATGTCCTATGCTGAGATGATGACAGATGATGTGCAAACATCTAGAGAAGAGAGATGCTTCCGACTGTGGATCAATAGTCTTGGAATTTCTACACATGTAAATAATCTATTTGAGGATGTCAGAAATGGATGGATACTTTTAGAAGTGTTAGACAAGATATTTCCAGGATCAGTTAACTGGAAACATGCAACAAGACCTCCAATTAGAATGCCATTCAGAAAAGTAGAGAACTGCAATCAGGTCATAAAAATTGGTAAAGAACTGAGATTCTCACTAGTCAATGTAGCTGGCAATGACATTGTGCAAGGAAATAAGAAGCTCATTCTTGCTTTATTGTGGCAGCTGATGCGATTCACAATGCTTCAACTGTTGAAAAATTTGAGATCTCATTCCCAAGGAAAGGAGATCAGTGATGCTGATATCCTGAAATGGGTGAACAGAAAAGTGAAGAGCATTGGCAGAACTTCTCACATAGAGAGCTTCAAGGATAAGAGCATGTCAAGTGGACTCTTTTTCCTTGAGCTTCTGAGTGCTGTTGAGCCTAGGGTTGTCAATTGGAACCTTGTCACCAAGGGTGAAAGTGATGATGAGAAAAGGTTGAATGCCACCTATATAATCAGCGTTGCACGGAAGCTCGGTTGTTCCATCTTTTTGTTACCTGATGATATTATGGAGGTTAATCAGAAGATGATTCTCACTCTTGCAGCCAGTATAATGTATTGGAGCCTGCAACAACAGACTGAAGAAACGGATTCATTTCCTTCCCCTGCCGGCACTGCTACTACCACCACGCCAGAAGCATCCCCGGCACCTTCGGTATGTGGGGAAGATGAAAGTTCCTCCATCGGTGGCGAATTCTCCAACTTGAGTGTTGACGATGCCACCTCTGACACCACAGCCACTTCTTCACAACCCGAGTCTGATGGCGTCTCTGCGGGAGATGAGCTGTTATGA 1932 0.4296 MHSETRTVRMRLGGSWAESGTDFTNDIDFEAFLKAYLNLQSQATAKQGGRRHSSSFLKETVTTLLHTISESEKACYVAHINSYLGDDPFLKQCLPLDPATNDIFDLAKDGVLLCKLINVAVPGTIDERAINCKRNPSLWEVNENHTLCLNSAKAIGCTVVNIGAQDLVEGRPHLVLGLISQIIKIQLLADLNLKKTPQLVELVDDNEEIEELLNLSPEKVLLKWMNFHLQRAGYEKTVRNFSSDVKDGEAYAYLLNVLAPEHCSPATLDTKDANERANLVLDHAERMGCKRYLTPRDVAEGTSNLNLAFVAQLFHHRSGLSTDTKKMSYAEMMTDDVQTSREERCFRLWINSLGISTHVNNLFEDVRNGWILLEVLDKIFPGSVNWKHATRPPIRMPFRKVENCNQVIKIGKELRFSLVNVAGNDIVQGNKKLILALLWQLMRFTMLQLLKNLRSHSQGKEISDADILKWVNRKVKSIGRTSHIESFKDKSMSSGLFFLELLSAVEPRVVNWNLVTKGESDDEKRLNATYIISVARKLGCSIFLLPDDIMEVNQKMILTLAASIMYWSLQQQTEETDSFPSPAGTATTTTPEASPAPSVCGEDESSSIGGEFSNLSVDDATSDTTATSSQPESDGVSAGDELL 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01832 643 ProSiteProfiles Calponin homology (CH) domain profile. 340 446 IPR001715 GO:0005515
Pumo9g01832 643 CDD CH_AtFIM_like_rpt4 461 569 - -
Pumo9g01832 643 ProSitePatterns Actinin-type actin-binding domain signature 2. 418 442 IPR001589 -
Pumo9g01832 643 SMART ch_5 72 185 IPR001715 GO:0005515
Pumo9g01832 643 SMART ch_5 217 316 IPR001715 GO:0005515
Pumo9g01832 643 SMART ch_5 463 567 IPR001715 GO:0005515
Pumo9g01832 643 SMART ch_5 342 444 IPR001715 GO:0005515
Pumo9g01832 643 MobiDBLite consensus disorder prediction 607 635 - -
Pumo9g01832 643 FunFam Fimbrin-2 like 66 192 - -
Pumo9g01832 643 Gene3D - 61 191 IPR036872 -
Pumo9g01832 643 FunFam Fimbrin-2 like 336 453 - -
Pumo9g01832 643 PANTHER FIMBRIN/PLASTIN 18 572 IPR039959 GO:0051015|GO:0051017
Pumo9g01832 643 FunFam Fimbrin-2 isoform A 193 321 - -
Pumo9g01832 643 MobiDBLite consensus disorder prediction 575 643 - -
Pumo9g01832 643 ProSitePatterns Actinin-type actin-binding domain signature 2. 159 183 IPR001589 -
Pumo9g01832 643 Gene3D - 454 566 IPR036872 -
Pumo9g01832 643 ProSiteProfiles Calponin homology (CH) domain profile. 461 569 IPR001715 GO:0005515
Pumo9g01832 643 ProSiteProfiles Calponin homology (CH) domain profile. 70 187 IPR001715 GO:0005515
Pumo9g01832 643 FunFam Fimbrin-1 isoform A 454 566 - -
Pumo9g01832 643 Gene3D - 193 321 IPR036872 -
Pumo9g01832 643 ProSiteProfiles Calponin homology (CH) domain profile. 215 318 IPR001715 GO:0005515
Pumo9g01832 643 Pfam Calponin homology (CH) domain 342 444 IPR001715 GO:0005515
Pumo9g01832 643 Pfam Calponin homology (CH) domain 464 565 IPR001715 GO:0005515
Pumo9g01832 643 Pfam Calponin homology (CH) domain 216 317 IPR001715 GO:0005515
Pumo9g01832 643 Pfam Calponin homology (CH) domain 99 185 IPR001715 GO:0005515
Pumo9g01832 643 CDD CH_AtFIM_like_rpt3 338 451 - -
Pumo9g01832 643 SUPERFAMILY Calponin-homology domain, CH-domain 68 566 IPR036872 -
Pumo9g01832 643 Gene3D - 336 453 IPR036872 -
Pumo9g01832 643 MobiDBLite consensus disorder prediction 575 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01832 Pumo-Chr9 47469647 47475940 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01832 6 627 EF-hand Containing Proteins AT5G55400 70.032 0.0 915
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01832 K17275 - gmx:100810854 1186.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01832 9 47469647 47475940 Pumo9g01832 9 47469647 47475940 ECH