Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2556 ATGTCAAAATTTGAGGGTGTTATTGTCTCCGATCAAGGGCTTCAAAGCCAGTTCACGCAGGTTGAGCTTCGCAGCCTGAAATCAAAATTTGTCTCTTTAAAGAATCAGAATGGTAAAGTTACATTTGGAGATTTGCCACCTTTAATGATGAAGCTAAACGCATTCAGAGACATGTACGGTGAGGATGAGATTAGGGGGATCTTGGGTGAATCAGGCACTGATTTTACCAATGACATTGATTTTGAAGCCTTATTAAAGGCATATTTGAATTTGCAAAGCAAAGCTACTACAAAACAAGGTGGTAGGAGGCACTCTTCGTCATTCCTCAAGGAAACCGTGACCACCCTTCTTCACACGATCAGTGGATCAGAAAAGGCCTGCTATGTTTCCCACATAAACATCTATCTTGGTGATGATCCATTTCTGAAGCAGTTTCTTCCATTGGACCCAGCTACAAATGATATATTTGATCTTGCCAAAGATGGCGTCCTTCTGTGTAAGCTTATCAATGTTGCTGTGCCTGGGACTATAGATGAGAGAGCCATCAATTGCAAACGAAATCCCAGTCTTTGGGAGGTAAATGAGAACCATACTCTATGCCTCAATTCCGCCAAGGCTATTGGCTGCACGGTGGTTAACATTGGCGCACAGGACTTAATTGAAGGAAGACCTCATCTTGTTCTAGGGTTGATTTCCCAAATCATAAAGATTCAGCTGCTGGCTGATCTTAACCTTAAGAAGACACCTCAGCTTGTGGAATTGGTTGGTGACAACGAGGAGATCGAAGAGCTTCTTAGTTTGTCTCCTGAAAAGGTTCTACTAAAATGGATGAATTTTCATCTCCAGAGAGCAGGTTACGAGAAAACTGTCAGAAATTTTTCTTCTGATGTTAAGGATGGAGAGGCCTATGCTTATCTGCTTAATGTCCTTGCTCCTGAACACTGCAGTCCGGTCACCTTGGATACCAAAGATGCCAATGAAAGGGCCAATCTGGTTCTTGATCACGCAGAGAGAATGGGCTGCAAAAGATACTTGACCCCAAGGGATGTTGCAGAGGGTACTTCAAATTTGAATCTTGCATTTGTTGCACAATTGTTTCATCATAGGAGTGGTCTATCTACAGACACTAAAAAGATGTCCTATGCTGAGATGATGACAGATGATGTGCAAACATCTAGAGAAGAGAGATGTTTCCGAATGTGGATCAATAGTCTTGGAATTTCTACACATGTAAATAATCTATTTGAGGATGTCAGAAATGGATGGATACTTTTAGAAGTGTTAGACAAGATATTTCCAGGATCAGTTAACTGGAAACATGCAACAAGACCTCCAATTAGAATGCCATTCAGAAAAGTAGAGAACTGCAATCAGGTCATAAAAATTGGTATACAGTTGAGATTCTCACTAGTCAATGTAGCTGGCAATGACATTGTGCAAGGAAATAAGAAGCTCATTCTTGCTTTACTGTGGCAGCTCATGCGATTCACAATGCTTCAACTGTTGAAAAATTTGAGAACACATTCCCAAGGAAAGGAGATCAGTGACGCTGATATCCTGAAATGGGTGAACAGAAAAGTGAAGAGCATTGGCAGAACTTCTCACATAGAGAGCTTCAAGGATAAGAGCTTGTCAAGTGGACTATTTTTCCTTGAGCTTCTGAGTGCTGTTGAGCCTAGGGTTGTGAATTGGAACCTTGTCACCAAGGGTGGAAGTGATGAAGAGAAAAGGTTGAATGCCACTTACATAATCAGCGTTGCACGGAAGCTTGGTTGTTCCATATTTTTGTTACCTGAGGATATCATGGAGGTTAATCAGAAGATGATTCTCACTCTTGCAGCCAGTATAATGTATTGGAGCCTGCAACAACAGACTGAAGAAACGGATTTGTTTCCTTCACCTGCCGACACTACTACTACCACCACGCCCGAAGCATCTCCGCCACCTTCGGTGTGTGGTGAAGATGAAAATTTCTCCGTCAGTGGCGAATTCTCCAACTTGAGTGTTGATGATGCCACCTCTGACACCACAACCTCTTCTTCACAACCAGAGTCTGATACCGTTTCCGCAGTAGATGAGCTGTTATGA 2088 0.4224 MSKFEGVIVSDQGLQSQFTQVELRSLKSKFVSLKNQNGKVTFGDLPPLMMKLNAFRDMYGEDEIRGILGESGTDFTNDIDFEALLKAYLNLQSKATTKQGGRRHSSSFLKETVTTLLHTISGSEKACYVSHINIYLGDDPFLKQFLPLDPATNDIFDLAKDGVLLCKLINVAVPGTIDERAINCKRNPSLWEVNENHTLCLNSAKAIGCTVVNIGAQDLIEGRPHLVLGLISQIIKIQLLADLNLKKTPQLVELVGDNEEIEELLSLSPEKVLLKWMNFHLQRAGYEKTVRNFSSDVKDGEAYAYLLNVLAPEHCSPVTLDTKDANERANLVLDHAERMGCKRYLTPRDVAEGTSNLNLAFVAQLFHHRSGLSTDTKKMSYAEMMTDDVQTSREERCFRMWINSLGISTHVNNLFEDVRNGWILLEVLDKIFPGSVNWKHATRPPIRMPFRKVENCNQVIKIGIQLRFSLVNVAGNDIVQGNKKLILALLWQLMRFTMLQLLKNLRTHSQGKEISDADILKWVNRKVKSIGRTSHIESFKDKSLSSGLFFLELLSAVEPRVVNWNLVTKGGSDEEKRLNATYIISVARKLGCSIFLLPEDIMEVNQKMILTLAASIMYWSLQQQTEETDLFPSPADTTTTTTPEASPPPSVCGEDENFSVSGEFSNLSVDDATSDTTTSSSQPESDTVSAVDELL 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2556 695 SUPERFAMILY EF-hand 16 95 IPR011992 -
Aed3g2556 695 ProSiteProfiles Calponin homology (CH) domain profile. 122 239 IPR001715 GO:0005515
Aed3g2556 695 Gene3D - 119 244 IPR036872 -
Aed3g2556 695 SMART ch_5 269 368 IPR001715 GO:0005515
Aed3g2556 695 SMART ch_5 515 619 IPR001715 GO:0005515
Aed3g2556 695 SMART ch_5 124 237 IPR001715 GO:0005515
Aed3g2556 695 SMART ch_5 394 496 IPR001715 GO:0005515
Aed3g2556 695 PANTHER FIMBRIN/PLASTIN 3 687 IPR039959 GO:0051015|GO:0051017
Aed3g2556 695 MobiDBLite consensus disorder prediction 630 647 - -
Aed3g2556 695 CDD CH 149 237 IPR001715 GO:0005515
Aed3g2556 695 CDD CH 514 621 IPR001715 GO:0005515
Aed3g2556 695 CDD CH 268 368 IPR001715 GO:0005515
Aed3g2556 695 ProSitePatterns Actinin-type actin-binding domain signature 2. 470 494 IPR001589 -
Aed3g2556 695 SUPERFAMILY Calponin-homology domain, CH-domain 121 618 IPR036872 -
Aed3g2556 695 ProSiteProfiles Calponin homology (CH) domain profile. 267 370 IPR001715 GO:0005515
Aed3g2556 695 ProSitePatterns Actinin-type actin-binding domain signature 2. 211 235 IPR001589 -
Aed3g2556 695 Gene3D - 388 505 IPR036872 -
Aed3g2556 695 CDD CH 401 495 IPR001715 GO:0005515
Aed3g2556 695 Gene3D - 506 618 IPR036872 -
Aed3g2556 695 ProSiteProfiles Calponin homology (CH) domain profile. 392 498 IPR001715 GO:0005515
Aed3g2556 695 Pfam Calponin homology (CH) domain 516 617 IPR001715 GO:0005515
Aed3g2556 695 Pfam Calponin homology (CH) domain 395 496 IPR001715 GO:0005515
Aed3g2556 695 Pfam Calponin homology (CH) domain 153 237 IPR001715 GO:0005515
Aed3g2556 695 Pfam Calponin homology (CH) domain 268 369 IPR001715 GO:0005515
Aed3g2556 695 Gene3D - 245 373 IPR036872 -
Aed3g2556 695 ProSiteProfiles Calponin homology (CH) domain profile. 513 621 IPR001715 GO:0005515
Aed3g2556 695 MobiDBLite consensus disorder prediction 630 695 - -
Aed3g2556 695 MobiDBLite consensus disorder prediction 659 688 - -
Aed3g2556 695 PANTHER FIMBRIN-1 3 687 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2556 Aed-Chr3 27768161 27774150 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2556 1 686 EF-hand Containing Proteins AT5G55400 69.000 0.0 977
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2556 K17275 - gmx:100810854 1275.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2556 3 27768161 27774150 Aed3g2556 3 27768161 27774150 ECH