Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g1887 ATGTCAAATTTTGTGGGTGTTATTGTATCTGATCAGTGGCTTCAAAGTCAGTTTACGCAGGTTGAACTTCGCAGCCTGAAATCAAAATTTACCTCATTAAAAAATCAGAATGGTAAAGTTACATTTGGAGACTTGCCACCTCTAGTGGTGAAGTTAAATGCATTTCGAGAAATGTATACTGAGAAGGAGATTCAGGTGATCATGGGCGAGTTAGGCACTGATTTGACAGATGAAGTTGATTTTGAAGCTTTCTTACGGGTTTATTTGAATTTGCAAAGCTGTGCTATAGAGAAACAAGGTGGTACAAAAAACTCTTCATCCTTCCTGAAGGCAACCACGACCACCCTTCTTCACACAATCAGTGAATCAGAAAAAGCATCTTATGTTGCTCACATAAACAGCTACCTTGGTGATGACCCATTTCTGCAGCGATATCTTCCTTTGGATCCCTCAACAAATGATTTATTTGATCATGCAAAAGATGGAGTTCTTCTGTGTAAACTTATCAATGTTGCTGTGCCTGGAACTATAGATGAGCGAGCCATCAACACCAAAACAGTTCTTAATCTTTGGGAAAGGAATGAGAACCACACTCTCTGCCTCAATTCTGCTAAGGCCATTGGCTGCAGTGTGGTTAACATTGGCACCCAGGACCTAGTTGAAGGAAGACCTCATCTTGTTTTAGGGTTAATTTCCCAAATCATAAAGATCCAACTATTGGCAGATCTAAACCTTAAGAAAACTCCGCAGCTTGTGGAATTGGTTGAAGACGGCCAGGAGGTTGAAGAGCTTCTTAGTTTGCCTCCTGAAAAGGTTCTGCTAAAATGGATGAATTTTCATCTCCAGAGAGGAGGGTATGATAGAACTGTCAAAAATTTTTCTTCTGATGTAAAGGATGGAAGAGCTTATGCTTATCTGCTCAACATCCTCGCTCCTGAACATTGCAGTCCATTCACCTTGGATACTAAGGATCCCATTGAAAGGGCAAAATTGGTAATTGATCATGCAGAGAGAATGGGCTGCAAAAGATACTTGACACCCAAGGACATTGTGGATGGTTCCTCTAATCTGAATCTTGCATTTGTGGCACAAATATTTCATTACAGGAATGGCTTATCTACAGACAATAAAAAGCTATCCTATGCTGAGATGATGACAGATGATGTACTAACATCTAGAGAGGAGAGATGCTTCCGGCTGTGGATCAATAGTCTTGGAATTGGGACCTAcgtaaataatttatttgaggaTGTCAGAAATGGATGGATACTTCTGGAAGTTCTAGATAAGATTTCTCCAGGATCAGTTATCTGGAAACAGGCGACAAAGCCTCCCATAAAGATGCCATTTAGAAAAGTAGAGAATTGCAATCAAGTCATAAAAGTTGGAAAACAACTGAAGTTCTCGCTAGTCAATGTAGCTGGCAATGACATTGTGCAAGGAAATAAGAAACTAATTCTTGCTTTCTTGTGGCAGTTGATGAGATTCAGTATACTTCAACTGTTGAAAATTTTGAGATATCATTCCCAAGGAATGGAGATCACTGATGCTGATATCCTGAAATGGATAAACAGAAAAGTGAAGAGCACTGGGAGAACTTCTCACATAGAGAGTTTTAAGGATAAGAGCTTGTCAAATGGAATCTTTTTCCTTGAGCTTCTCAGTGCTGTAGAGCCCAGGGTCGTCAATTGGAATATAGTCACTAAGGGCGAAAGTGATAATGAGAAGAAGTTGAATGCTACCTATATAATCAGTGTTGCTCGCAAGCTTGGTTGTTCCATATTTTTGTTACCTGAGGATATTATGGAGGTTAACCATAAGATGATCCTCACTCTTGCTGCCAGTATAATGTATTGGAGTCTGCAACAGTCAGCCGAAGATGCAGATTCATTTCCTTCACCTGTTGACACCATAACTTCTACTGCTACGCTTGATGCATCCCCATCACCATCAGTTAGTGGCGAAGACGAGAATTCCTCCCTTGGGAGTGAATTCTCCATCTCCAACTCCAACTTAAGCAGCAGCGACGAAACGACCTCTGACACGACAGTTTCCTCACAACTTGAGTATGAAGGTGTTCTAGTGGGAGACGACACCTAG 2100 0.4052 MSNFVGVIVSDQWLQSQFTQVELRSLKSKFTSLKNQNGKVTFGDLPPLVVKLNAFREMYTEKEIQVIMGELGTDLTDEVDFEAFLRVYLNLQSCAIEKQGGTKNSSSFLKATTTTLLHTISESEKASYVAHINSYLGDDPFLQRYLPLDPSTNDLFDHAKDGVLLCKLINVAVPGTIDERAINTKTVLNLWERNENHTLCLNSAKAIGCSVVNIGTQDLVEGRPHLVLGLISQIIKIQLLADLNLKKTPQLVELVEDGQEVEELLSLPPEKVLLKWMNFHLQRGGYDRTVKNFSSDVKDGRAYAYLLNILAPEHCSPFTLDTKDPIERAKLVIDHAERMGCKRYLTPKDIVDGSSNLNLAFVAQIFHYRNGLSTDNKKLSYAEMMTDDVLTSREERCFRLWINSLGIGTYVNNLFEDVRNGWILLEVLDKISPGSVIWKQATKPPIKMPFRKVENCNQVIKVGKQLKFSLVNVAGNDIVQGNKKLILAFLWQLMRFSILQLLKILRYHSQGMEITDADILKWINRKVKSTGRTSHIESFKDKSLSNGIFFLELLSAVEPRVVNWNIVTKGESDNEKKLNATYIISVARKLGCSIFLLPEDIMEVNHKMILTLAASIMYWSLQQSAEDADSFPSPVDTITSTATLDASPSPSVSGEDENSSLGSEFSISNSNLSSSDETTSDTTVSSQLEYEGVLVGDDT 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g1887 699 ProSiteProfiles Calponin homology (CH) domain profile. 513 621 IPR001715 GO:0005515
Sto5g1887 699 Gene3D - 388 505 IPR036872 -
Sto5g1887 699 Gene3D - 245 373 IPR036872 -
Sto5g1887 699 SUPERFAMILY EF-hand 12 95 IPR011992 -
Sto5g1887 699 MobiDBLite consensus disorder prediction 630 699 - -
Sto5g1887 699 ProSiteProfiles Calponin homology (CH) domain profile. 267 370 IPR001715 GO:0005515
Sto5g1887 699 SUPERFAMILY Calponin-homology domain, CH-domain 120 618 IPR036872 -
Sto5g1887 699 CDD CH 123 237 IPR001715 GO:0005515
Sto5g1887 699 PANTHER FIMBRIN/PLASTIN 3 687 IPR039959 GO:0051015|GO:0051017
Sto5g1887 699 Pfam Calponin homology (CH) domain 516 617 IPR001715 GO:0005515
Sto5g1887 699 Pfam Calponin homology (CH) domain 394 495 IPR001715 GO:0005515
Sto5g1887 699 Pfam Calponin homology (CH) domain 268 369 IPR001715 GO:0005515
Sto5g1887 699 Pfam Calponin homology (CH) domain 145 237 IPR001715 GO:0005515
Sto5g1887 699 SMART ch_5 269 368 IPR001715 GO:0005515
Sto5g1887 699 SMART ch_5 124 237 IPR001715 GO:0005515
Sto5g1887 699 SMART ch_5 515 619 IPR001715 GO:0005515
Sto5g1887 699 SMART ch_5 394 496 IPR001715 GO:0005515
Sto5g1887 699 MobiDBLite consensus disorder prediction 630 689 - -
Sto5g1887 699 CDD CH 514 621 IPR001715 GO:0005515
Sto5g1887 699 CDD CH 268 368 IPR001715 GO:0005515
Sto5g1887 699 ProSitePatterns Actinin-type actin-binding domain signature 2. 211 235 IPR001589 -
Sto5g1887 699 PANTHER FIMBRIN-1 3 687 - -
Sto5g1887 699 Gene3D - 118 244 IPR036872 -
Sto5g1887 699 Gene3D - 506 618 IPR036872 -
Sto5g1887 699 CDD CH 393 495 IPR001715 GO:0005515
Sto5g1887 699 ProSiteProfiles Calponin homology (CH) domain profile. 392 498 IPR001715 GO:0005515
Sto5g1887 699 ProSiteProfiles Calponin homology (CH) domain profile. 122 239 IPR001715 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g1887 Sto-Chr5 13895764 13902162 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g1887 1 666 EF-hand Containing Proteins AT5G55400 70.987 0.0 994
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g1887 K17275 - gmx:100794850 1129.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1887 5 13895764 13902162 Sto5g1887 5 13895764 13902162 ECH