Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01988 ATGTCGAAATTTGAGGGTGTTATTGTCTCCGATCAATTGCTTCAAGGCCAGTTCACGCAGGTTGAGCTTCGCAGCCTCAAATCAAAATTTGTCTCTTTAAAGAATCAGAATGGCAAAGTTACATTTGGAGATTTGCCACCTTTAATGGTGAAGCTAAACGCATTCAGAGACATGTACAAGGAGGATGAGATTAGGGGGATCTTGGGTGAATCAGGGACTGACATTACCAATGAAATTGATTTTGAAGCCTTCTTAAAGGCATATTTGAATTTGCGAACCCAAGCTACAGCAAAACAAGGTGGTAGGAGGCACTCCTCATCATTCCTCAAGGATTCCATAACCACCCTTCTTCACACAATCAGTGAATCAGAAAAAGCCTGCTATGTTGCCCACATAAACAGCTACCTTGGTGATGATCCATTTTTGAAGCATTATCTTCCATTGGACCCACCTACAAATGATATTTTTGATCTTGCAAAAGATGGCATTCTTCTGTGTAAGCTTATCAATGTTGCTGTGCCTGGGACCATAGATGAGCGAGCCATCAATGCCAAACGAAAACTTAGTCTTTGGGAGGTAAATGAGAACCATACGCTATGCCTCAATTCCGCCAAGGCTATTGGCTGCACGGTGGTTAACATTGGCACACAGGACTTAGTTGAAGGAAGACCTCATCTTGTTCTAGGGTTGATTTCCCAAATCATAAAGATTCAGCTGCTGGCAGATCTCAATCTTAAGAAGACACCTCAGCTTGTGGAATTGGTTGATGACAGCGAGGAGATTGAAGAGCTTCTTAATTTATCTCCTGAAAAGGTTCTGCTAAAATGGATGAATTTTCATCTCCAGAGAGCAGGTTATGAGAAAACTGTCAGAAATTTTTCTTCTGATGTTAAGGATGGAGAGGCTTATGCTTATCTGCTTAATGTCCTTGCTCCTGAACATTGCAGTCCAGCCACCTTGGATACCAAGAATGCCAATGAAAGGGCGAATCTGGTTCTTGATCATGCAGAGAGAATGGGCTGCAAAAGATACTTGTCCCCAAGGGATGTTGTGGAGGGTACTTCAAATTTGAATCTTGCATTTGTTGCACAATTGTTTCATCACAGGAGTGGTCTATCGACAGATACTAAAAAGATGTCCTATGCTGAGATGATCACCGATGATGTGCAAACATCTAGAGAAGAGAGATGCTTTCGACTGTGGATCAATAGTCTTGGAATTTCTACGCATGTAAATAATCTATTTGAGGATGTCAGAAATGGATGGATACTTTTAGAAGTGCTAGACAAGATTTTTCCAGGAACAGTTAACTGGAAACAGGCAACAAGACCTCCAATTAGAATGCCATTCAGAAAAGTAGAAAACTGCAATCAGGTCATAGAAATTGCTACAGAACTGAGATTCTCACTTGTCAATGTAGCTGGCAATGACATTGTGCAAGGAAATAAGAAGCTTATTCTTGCTTTGTTGTGGCAGCTGATGAGATTCACAATGCTTCAGCTGTTGAAAAATTTGAGATCTCATTCCCAAGGAAAGGAGATCAGTGATGTTGATATCCTGAAATGGGCAAACAGAAAAGTGAAGAGCATTGGCAGAACTTCTCACATAGAGAGCTTCAAGGATAAGAGCTTGTCAAGTGGACTCTTTTTCCTTGAGCTTCTGAGTGCTGTTGAGCCTAGGGTTGTCAATTGGAACCTTGTCACCAAGGGTGGAAGTGATGATGAGAAAAGGTTGAATGCTACGTATATAATCAGTGTTGCACGAAAGCTTGGTTGTTCCATCTTTTTGTTACCTGAGGATATAATGGAGGTTAATCAGAAGATGATTCTCACTCTAACAGCCAGTATAATGTATTGGAGCCTGGAACAACAGCCTGAAGAAACAGATTCATTTCCTTCACCTGCTGGCACTGCAACTACCACCACGCCAGAAGCATCGCCGGTACCTTCGGTATGTGGTGAAGATGAAAGTTCCTCCTTTGGTGGTGAATTCTCCAACTTGAGTGTTGATGATGCTGACGACAACTCAGACTCCACAGCCTCTTCTTCACAACCTGAGTCTGATGTCGCTTCTGGGGGAGATTCGTTGTTATGA 2094 0.4202 MSKFEGVIVSDQLLQGQFTQVELRSLKSKFVSLKNQNGKVTFGDLPPLMVKLNAFRDMYKEDEIRGILGESGTDITNEIDFEAFLKAYLNLRTQATAKQGGRRHSSSFLKDSITTLLHTISESEKACYVAHINSYLGDDPFLKHYLPLDPPTNDIFDLAKDGILLCKLINVAVPGTIDERAINAKRKLSLWEVNENHTLCLNSAKAIGCTVVNIGTQDLVEGRPHLVLGLISQIIKIQLLADLNLKKTPQLVELVDDSEEIEELLNLSPEKVLLKWMNFHLQRAGYEKTVRNFSSDVKDGEAYAYLLNVLAPEHCSPATLDTKNANERANLVLDHAERMGCKRYLSPRDVVEGTSNLNLAFVAQLFHHRSGLSTDTKKMSYAEMITDDVQTSREERCFRLWINSLGISTHVNNLFEDVRNGWILLEVLDKIFPGTVNWKQATRPPIRMPFRKVENCNQVIEIATELRFSLVNVAGNDIVQGNKKLILALLWQLMRFTMLQLLKNLRSHSQGKEISDVDILKWANRKVKSIGRTSHIESFKDKSLSSGLFFLELLSAVEPRVVNWNLVTKGGSDDEKRLNATYIISVARKLGCSIFLLPEDIMEVNQKMILTLTASIMYWSLEQQPEETDSFPSPAGTATTTTPEASPVPSVCGEDESSSFGGEFSNLSVDDADDNSDSTASSSQPESDVASGGDSLL 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01988 697 Pfam Calponin homology (CH) domain 394 496 IPR001715 GO:0005515
Cca05g01988 697 Pfam Calponin homology (CH) domain 268 369 IPR001715 GO:0005515
Cca05g01988 697 Pfam Calponin homology (CH) domain 152 237 IPR001715 GO:0005515
Cca05g01988 697 Pfam Calponin homology (CH) domain 517 617 IPR001715 GO:0005515
Cca05g01988 697 Gene3D - 118 244 IPR036872 -
Cca05g01988 697 Gene3D - 245 373 IPR036872 -
Cca05g01988 697 PANTHER FIMBRIN-1 3 688 - -
Cca05g01988 697 MobiDBLite consensus disorder prediction 659 690 - -
Cca05g01988 697 ProSitePatterns Actinin-type actin-binding domain signature 2. 211 235 IPR001589 -
Cca05g01988 697 MobiDBLite consensus disorder prediction 625 647 - -
Cca05g01988 697 SUPERFAMILY Calponin-homology domain, CH-domain 120 618 IPR036872 -
Cca05g01988 697 PANTHER FIMBRIN/PLASTIN 3 688 IPR039959 GO:0051015|GO:0051017
Cca05g01988 697 CDD CH 268 368 IPR001715 GO:0005515
Cca05g01988 697 Gene3D - 506 618 IPR036872 -
Cca05g01988 697 SMART ch_5 124 237 IPR001715 GO:0005515
Cca05g01988 697 SMART ch_5 269 368 IPR001715 GO:0005515
Cca05g01988 697 SMART ch_5 515 619 IPR001715 GO:0005515
Cca05g01988 697 SMART ch_5 394 496 IPR001715 GO:0005515
Cca05g01988 697 CDD CH 122 237 IPR001715 GO:0005515
Cca05g01988 697 ProSiteProfiles Calponin homology (CH) domain profile. 513 621 IPR001715 GO:0005515
Cca05g01988 697 ProSiteProfiles Calponin homology (CH) domain profile. 392 498 IPR001715 GO:0005515
Cca05g01988 697 MobiDBLite consensus disorder prediction 625 697 - -
Cca05g01988 697 ProSitePatterns Actinin-type actin-binding domain signature 2. 470 494 IPR001589 -
Cca05g01988 697 ProSiteProfiles Calponin homology (CH) domain profile. 122 239 IPR001715 GO:0005515
Cca05g01988 697 SUPERFAMILY EF-hand 16 95 IPR011992 -
Cca05g01988 697 Gene3D - 388 505 IPR036872 -
Cca05g01988 697 ProSiteProfiles Calponin homology (CH) domain profile. 267 370 IPR001715 GO:0005515
Cca05g01988 697 CDD CH 393 495 IPR001715 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01988 Cca-Chr5 39746547 39750931 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01988 1 679 EF-hand Containing Proteins AT5G55400 69.553 0.0 986
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01988 K17275 - gmx:100810854 1248.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01988 05 39746547 39750931 Cca05g01988 05 39746547 39750931 ECH