Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g02086 ATGTCAAAATTTGAGGGTGTTATTGTCTCTGATCAATGGCTTCAAAGCCAGTTTACACAGGTTGAACTTCGTAGTCTCAAATCAAAATTTGTCTCTTTGAAAAATCAGAATGGTAAAGTTACATTCGGAGATTTACCACGTTTAATGATGAAGATAAAGGCGTTTATAGATGTGTACAGTGAGGATGAGATTAAGAGGATCTTGAGTGAGTCAGGCAATGACTTCACCCATGATGTTGATTTTGAAGCCTTCTTAAGGATATATTTGAATTTGCGAAGCCAAGCTACAACCAAACAAGGTGGATTGAAGCACTCATCATCATTCCTTAACGAAACCATAACTACACTTCTTCACACGATTAGTGAATCTGAAAAGGCCTGCTATGTTGCTCACATAAACAGCTACCTTGGCGATGATCCATTTCTGAGTCAATATCTTCCTTTGGATCCAGCTACAAATGATCTATTTGATCTTTCCAAAGATGGCATTCTTTTGTGTAAGCTTATCAATGTTGCTGTGCCGGGAACAATAGACGAGCGAGCCATCAACACGAAACGGAATCTTACTCTTTGGGAGATAAATGAGAACCATACTTTATGCCTTAATTCTGCTAAGGCTATTGGCTGCACAGTGGTCAACATTGGCACACAGGACTTAGTTGAAGGAAGACCTCATCTTGTTCTAGGGTTAATATCCCAAATCATAAAGATTCAACTGTTGGCTGATCTCAGCCTTAAGAAGACGCCTCAGCTTGTGGAATTGGTCGATGATAGTCAGGAGATTGAAGAGCTTCTTAATTTGTCTCCTGAAAAGGTTCTACTAAAATGGATGAATTTTCATCTCCAAAGGGGAGGTTACCAAAAAACTGTTCAGAATTATTCTTCTGATTTGAAGGACGGAGAGGCTTATGCTTATCTTCTTAATGTCCTTGCTCCTGAACATTGCAATCCATCAACCTTAGACACTAAAGATAGCAATGAAAGATCAAATCTTGTGCTTGAGCATGCAGAGAGACTGGGCTGCAAAAGATACTTGACCCCGAGGGACATTACGGAGGGTACCTCGAATCTTAATCTTGCATTTGTCGCACAATTATTTCATCACAGGAGTGGCTTATCGACAGATACTAAAAAGATGTCGTATGCTGAGATGATGACAGAAGATGTGCAAACATGTAGAGAAGAGAGATGCTTCAGGATGTGGATCAATAGTCTTGGAATTTCTACTCGTGTTAATAATCTATTTGAGGATGTCAGAAATGGATGGATACTACTAGAAGTGCTAGACAAGATTTTTCCAGGATCAGTAAATTGGAAACTTGCAACAAGACCTCCAATTAGAATGCCATTCAAAAAAGTAGAAAACTGCAATCAGGTTGTCAAAGTTGGTAAACAATTCAGATTCTCACTAGTTAATGTAGCTGGCAATGACATTGTGCAAGGAAATAAGAAGCTCATTCTTGCTTTATTGTGGCAGTTGATGAGATTCACAATGCTTCAACTATTGAAAAATTTGAGATCTCATTCCCAAGGAAAGGAGATCAGAGATGCTGATATCCTTAAATGGGCAAACAGAAAAGTCAAAAGCATTGGCAAAACTTCTCACATTGAGAGTTTCAAGGATAGGAGTTTGTCAAGTGGACTATTTTTTCTTGAGCTTCTGAGTGCTGTAGAGCCAAGGGTTGTCAATTGGAACCTTGTCACCAAGGGTGAAAGTGATGATGAGAAGAAGTTGAATGCAACCTACATAATCAGTGTTGCACGAAAGCTTGGTTGTTCCATATTTTTGCTACCTGAGGATATCATGGAGGTTAATCAGAAGATGATTCTGACTCTTGCAGCAAGTATAATGTATTGGAGCCTTCAACAACAATCTGAAGATGCAGATTCATTCCCTTCACCTGCTAGCACTGTCACTACAACCACACCTGAAGCATCACCTTGTCCTTCAGTTTGTGGTGAAGATGAAAGTTATTCCTCCTTGAATGGTGATTTCTCCAACTTGAGTGTTGATGATACCACCTCAGATACAACAGTTTCTTCACAACTTGAGTCTGATGAGCTATTTTGA 2070 0.3932 MSKFEGVIVSDQWLQSQFTQVELRSLKSKFVSLKNQNGKVTFGDLPRLMMKIKAFIDVYSEDEIKRILSESGNDFTHDVDFEAFLRIYLNLRSQATTKQGGLKHSSSFLNETITTLLHTISESEKACYVAHINSYLGDDPFLSQYLPLDPATNDLFDLSKDGILLCKLINVAVPGTIDERAINTKRNLTLWEINENHTLCLNSAKAIGCTVVNIGTQDLVEGRPHLVLGLISQIIKIQLLADLSLKKTPQLVELVDDSQEIEELLNLSPEKVLLKWMNFHLQRGGYQKTVQNYSSDLKDGEAYAYLLNVLAPEHCNPSTLDTKDSNERSNLVLEHAERLGCKRYLTPRDITEGTSNLNLAFVAQLFHHRSGLSTDTKKMSYAEMMTEDVQTCREERCFRMWINSLGISTRVNNLFEDVRNGWILLEVLDKIFPGSVNWKLATRPPIRMPFKKVENCNQVVKVGKQFRFSLVNVAGNDIVQGNKKLILALLWQLMRFTMLQLLKNLRSHSQGKEIRDADILKWANRKVKSIGKTSHIESFKDRSLSSGLFFLELLSAVEPRVVNWNLVTKGESDDEKKLNATYIISVARKLGCSIFLLPEDIMEVNQKMILTLAASIMYWSLQQQSEDADSFPSPASTVTTTTPEASPCPSVCGEDESYSSLNGDFSNLSVDDTTSDTTVSSQLESDELF 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g02086 689 PANTHER FIMBRIN/PLASTIN 3 683 IPR039959 GO:0051015|GO:0051017
Car02g02086 689 Gene3D - 245 373 IPR036872 -
Car02g02086 689 SUPERFAMILY EF-hand 13 95 IPR011992 -
Car02g02086 689 SUPERFAMILY Calponin-homology domain, CH-domain 120 618 IPR036872 -
Car02g02086 689 Gene3D - 506 618 IPR036872 -
Car02g02086 689 ProSitePatterns Actinin-type actin-binding domain signature 2. 211 235 IPR001589 -
Car02g02086 689 CDD CH 268 368 IPR001715 GO:0005515
Car02g02086 689 ProSiteProfiles Calponin homology (CH) domain profile. 122 239 IPR001715 GO:0005515
Car02g02086 689 ProSiteProfiles Calponin homology (CH) domain profile. 513 621 IPR001715 GO:0005515
Car02g02086 689 ProSitePatterns Actinin-type actin-binding domain signature 2. 470 494 IPR001589 -
Car02g02086 689 CDD CH 401 495 IPR001715 GO:0005515
Car02g02086 689 MobiDBLite consensus disorder prediction 629 689 - -
Car02g02086 689 CDD CH 122 237 IPR001715 GO:0005515
Car02g02086 689 ProSiteProfiles Calponin homology (CH) domain profile. 267 370 IPR001715 GO:0005515
Car02g02086 689 Gene3D - 388 505 IPR036872 -
Car02g02086 689 ProSiteProfiles Calponin homology (CH) domain profile. 392 498 IPR001715 GO:0005515
Car02g02086 689 SMART ch_5 394 496 IPR001715 GO:0005515
Car02g02086 689 SMART ch_5 515 619 IPR001715 GO:0005515
Car02g02086 689 SMART ch_5 269 368 IPR001715 GO:0005515
Car02g02086 689 SMART ch_5 124 237 IPR001715 GO:0005515
Car02g02086 689 Gene3D - 113 243 IPR036872 -
Car02g02086 689 PANTHER FIMBRIN-1 3 683 - -
Car02g02086 689 Pfam Calponin homology (CH) domain 515 617 IPR001715 GO:0005515
Car02g02086 689 Pfam Calponin homology (CH) domain 268 369 IPR001715 GO:0005515
Car02g02086 689 Pfam Calponin homology (CH) domain 395 496 IPR001715 GO:0005515
Car02g02086 689 Pfam Calponin homology (CH) domain 151 237 IPR001715 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g02086 Car-Chr2 51233493 51238838 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g02086 1 688 EF-hand Containing Proteins AT5G55400 69.886 0.0 1003
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g02086 - K17275 gmx:100810854 1205.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g02086 02 51233493 51238838 Car02g02086 02 51233493 51238838 ECH