Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3993 ATGGCATCTTCGGATGATGAAATTGATACACAGCCATTGTCTGTGTCAAATTACCATTTCGAAGATGATAAAGATGCGCCTATTTCCTTTTCTGTTTTGCCGATTCAATGGAGTGAGTCTGAGAATCCTAAAGGGATGAAAGAGAAGGTGTTTTTGCACGGTAATGCCGATAATGGCCTGAAGAAAATTTTTATGCAAGTTATAGCATGGAGGTTTGATCTTCTTTCCAATGTCAAGCCTGAGATATCAGTGCTATCAAAGGATGGTAAATGGATCAAACTTCAAAAGCCAAGGAAGAGCTACGAGGATACCATAAGGACTATTTTGATCGTTGTTTACTTCATGCATTTTGTGAAGAAGAATCCGGAAACATCAGCAAAATCTGTGTGGGATAGCTTGAGTAAGAATAAGGATTTTAGTTACTATGAAGTTAAACCTTCACATAATGATTTGTTAAACCATATGGCTTTAATGGCCGAAGCTGCCACAAAGGATGCTGTCTTAGCAAAGTCCAAGCTTTTGCTCACAGTTCTGGAAGATAAGGATACAATGAGGATTAAGAAACTTTCCGATGAGGAAGTTAAAGAGCTAGCACGACCTGGATTTATAATTGATGATATTGACAATGATGAGATTGATGAGACTGCTGCTGATGAAGAATCAGATGAAGAGGATGCGTTATTTGATTCTGTTTGTTCGATTTGTGACAACGGCGGAAATATTTTGTGTTGTGATGGAAAGTGCATGAGGTCATTTCATGCTAATAAGAAGGATGGTGAAGATTCTTCTTGTGCCTCCCTTGGATTTAGCCGGAAAGAAGTTGAGGAGATCCAAAATTTCTATTGTAAGAATTGCGAATATAATCAACACCAGTGTTTTCAATGTGGCAAACTAGGCTGTTCTGATAAATTTGCTGGTGCTGAGGTCTTCAAATGTGCTTCTGCAACCTGCGGTTTCTTTTATCATCCAGAATGTGTCACGAAGTTACTAAAGCTGGTGGCTAAGGATGCTCCAGCAGAACTTTTAAGCAATATAGCCAAGGGGGAGCCTTTCACCTGTCCTGCTCATTATTGCCGTATCTGTAGTGAAATGGAAAACAAGAACGAGCACGAGTTACACTTTGCTGTTTGTAGGCGTTGTCCCAGGTCATATCATCGCAAATGTTTGCCAAGAAAGATTGCTTTTGAAGACGAAGTGGATGAAGGCATTGCGCCCAGGGCTTGGGAAGATCTTTTGCCAAACAATCGCATTCTTATTTATTGCTTAAAGCATGAGATAGATGATGAACTTGGAACTCCTATAAGAGATCATATAAAATTCCCTGGTGTTAAAGAGAAAATAAATACTGCAACCAAAGAAGTTATATCGAACAAGAACAATGCTAAGTTAGATGATTTACTTGTCAAAAGAACAAGTGCTAAATCATCTATATCGTCTAGTAAAATGTCCTCCGAGAGAGTTGATATCAAGAATTTTAGAAAGATATCTGGATCAAATATCCCTAGAAAGAAAGCAAACGATGCAACAAGAAGGTGTTTGAGTGAAAATAAGAGGTCAACTTTAAAGGAAACAGAAAGGTCTAACTATGAGGAGAATCAGCCCTCACTGGGTGTGCAACTTTATGATCTCTATCGTAAGGGTTCCGACCGAATTAGTTCTGACAACCATGTTGATAATGTAGCTGATAACACAGTGTCTGTTAAGCCTAAAAAGCCGAGCAGTGCACCACCCCAATTAGGCGTAGATTCAGAGAGGAGATTGTTGGCTTTGTTTAAAGAAGCTTCATCATCAGTTACAATGGAGAATGTCATAAAGGAACATAACTTTGCTTCTTCTCATGCTCACTCGCTAAAAAATGTTGTGGAGAAGACTATTACAGTGGGAAAGTTGGAAGGATCAGTTGAGGCTGTTCGAACGGCTTTAAGGATGCTGGATAAAGGACATAGCATTCGGGATGCAGAAGCTGTTTGTGGTCCTGATGTTATGAACCGGTTATTCAAGTGGAAGGACAAGTTGAAAGTATATCTTGCACCTGTTTTATATGGCAATCGCTACACTTCATTTGGTCGCCATTTTACACAAGTGGAAAAGCTGGAAGGGATTGTGGATAAACTCCAATGGTATGTTCAGAATGGTGATATGGTTGTGGACTTCTGTTGTGGTGCTAATGATTTTAGCATTCTCATGAAGAAAAAACTTGAAAATACTGGGAAGAGTTGCTTCTTCAAAAACTTTGATTTACTTCCAACCAAGAATGATTTTAATTTTGAGATGAGAGATTGGATGACTATCCAGCGAAAGGAGTTGCCTTCAGGGTCACGGTTGATCATGGGTCTTAATCCCCCCTTTGGGGTTAAAGCAGCTTTGGCTAACAAGTTTATAGACAAGGCTTTAGAGTTTGAGCCGAAGCTCCTGATTCTTATAGTACCTCCAGAGACAGAGAGGCTGGATAAAAAACGGTCACCATATGATCTTGTCTGGGAGGATGAGAGGTTTCTATCAGGCAAGTCATTTTATCTACCTGGATCAGTTGATACTAATGACAAGCAATTGGAGCAATGGAATGTAAAGTCACCCCCTCTCTCCCTTTGGAGCCGTCCAGACTGGACTGATAAGCATAAGCTCATAGCCCAGGAGAATGGTCACCTGTTCAGACATCATGATGTCTCGAAAATGGAAAGCTTCGATAGGGAAAAATCATCTGCCAGTCATACTGTGGATGATGACTATGTTGATGATACCATGCTGGATCGTATGCTGGATCATGATTTCTTGAAGTCAACTAATGGTGAAGATTGCTCATTTATGGTTGGACAGGTACAGCAAGGCTCGTCTCATGGAAATGTTGATAGAGAGAGTCAAGAGAGACATGAGTATTTGGTGACCAAGGCTGAGAGCACCTCATGGAAAAGGAAGCGATCAGACGAAAATGATGGAAGAGGACCAGCTGTGACCTTACCAGCTAAAAGGCAAGGTCTGAGTGAAATGCCTGAGGGAAATCAGTCCGGATCAGACATGATGCTTTCAGGTGATGATGTTGGTGATAATGGTTATACACCTCTGGAGCCCCACTCTTCCATTGGTGATGATGGCCAAAGTTGGCCAAATGTTGCTGATTCCCTCCCTGATTATGGGTTGGCCGAATTACAGGAACACAGTAGCAGGCATATGGGAGACAACACAAGTAGCTTTGGATATAAACCTCATCTCAGGGAGGATGATAGTCACCTGAGGGAATTAGAGGCAAGACAACAGATTCACCCTCCAGGACTTCAGAATCCTGATCCTATGAGTAGTAGTTATCTATCTGGTCATGGTCCTGCTTATAACCAAATGGGATCTACTTATTCAGTACTCGGTTCAAGACCTGAATTGCCTTACATGATGAATACACCCGCTATGCCGACGAATACACCAGCTATGCAACGATATGCACCTCGTCTCGATGAATTAAACCATGTTAGGACAAACTCTTTTGGGCCTGAGCATCCTACAGTTAATAGAAGTAACACTTCTGAACGTAGTACCCCTCAACCTGGATCTGGAAATGTGCTGCCAGGTTTTCCAAAGATGCCATATTATGTACATAGATGA 3594 0.4112 MASSDDEIDTQPLSVSNYHFEDDKDAPISFSVLPIQWSESENPKGMKEKVFLHGNADNGLKKIFMQVIAWRFDLLSNVKPEISVLSKDGKWIKLQKPRKSYEDTIRTILIVVYFMHFVKKNPETSAKSVWDSLSKNKDFSYYEVKPSHNDLLNHMALMAEAATKDAVLAKSKLLLTVLEDKDTMRIKKLSDEEVKELARPGFIIDDIDNDEIDETAADEESDEEDALFDSVCSICDNGGNILCCDGKCMRSFHANKKDGEDSSCASLGFSRKEVEEIQNFYCKNCEYNQHQCFQCGKLGCSDKFAGAEVFKCASATCGFFYHPECVTKLLKLVAKDAPAELLSNIAKGEPFTCPAHYCRICSEMENKNEHELHFAVCRRCPRSYHRKCLPRKIAFEDEVDEGIAPRAWEDLLPNNRILIYCLKHEIDDELGTPIRDHIKFPGVKEKINTATKEVISNKNNAKLDDLLVKRTSAKSSISSSKMSSERVDIKNFRKISGSNIPRKKANDATRRCLSENKRSTLKETERSNYEENQPSLGVQLYDLYRKGSDRISSDNHVDNVADNTVSVKPKKPSSAPPQLGVDSERRLLALFKEASSSVTMENVIKEHNFASSHAHSLKNVVEKTITVGKLEGSVEAVRTALRMLDKGHSIRDAEAVCGPDVMNRLFKWKDKLKVYLAPVLYGNRYTSFGRHFTQVEKLEGIVDKLQWYVQNGDMVVDFCCGANDFSILMKKKLENTGKSCFFKNFDLLPTKNDFNFEMRDWMTIQRKELPSGSRLIMGLNPPFGVKAALANKFIDKALEFEPKLLILIVPPETERLDKKRSPYDLVWEDERFLSGKSFYLPGSVDTNDKQLEQWNVKSPPLSLWSRPDWTDKHKLIAQENGHLFRHHDVSKMESFDREKSSASHTVDDDYVDDTMLDRMLDHDFLKSTNGEDCSFMVGQVQQGSSHGNVDRESQERHEYLVTKAESTSWKRKRSDENDGRGPAVTLPAKRQGLSEMPEGNQSGSDMMLSGDDVGDNGYTPLEPHSSIGDDGQSWPNVADSLPDYGLAELQEHSSRHMGDNTSSFGYKPHLREDDSHLRELEARQQIHPPGLQNPDPMSSSYLSGHGPAYNQMGSTYSVLGSRPELPYMMNTPAMPTNTPAMQRYAPRLDELNHVRTNSFGPEHPTVNRSNTSERSTPQPGSGNVLPGFPKMPYYVHR* 1198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3993 1197 Pfam Cytosine specific DNA methyltransferase replication foci domain 14 134 IPR022702 -
Psa5g3993 1197 MobiDBLite consensus disorder prediction 504 529 - -
Psa5g3993 1197 MobiDBLite consensus disorder prediction 1158 1182 - -
Psa5g3993 1197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 290 393 IPR013083 -
Psa5g3993 1197 PANTHER ENHANCED DOWNY MILDEW PROTEIN 1 1190 - -
Psa5g3993 1197 MobiDBLite consensus disorder prediction 949 979 - -
Psa5g3993 1197 CDD PHD2_NSD 291 356 - -
Psa5g3993 1197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 228 289 IPR013083 -
Psa5g3993 1197 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 1 1190 - -
Psa5g3993 1197 MobiDBLite consensus disorder prediction 943 1003 - -
Psa5g3993 1197 CDD PHD3_NSD 357 390 - -
Psa5g3993 1197 SMART PHD_3 291 357 IPR001965 -
Psa5g3993 1197 SMART PHD_3 358 425 IPR001965 -
Psa5g3993 1197 SMART PHD_3 231 286 IPR001965 -
Psa5g3993 1197 MobiDBLite consensus disorder prediction 502 532 - -
Psa5g3993 1197 MobiDBLite consensus disorder prediction 1156 1197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3993 Psa-Chr5 314445501 314474585 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3993 - - mtr:MTR_3g055370 1885.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3993 5 314445501 314474585 Psa5g3993 5 314445501 314474585 ECH