Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1539 ATGTCAAATTTTGTGGGCGTTATCGTCTCCGATCAATTTCTTCAAAGTCAGTTTACGCAATTTGAACTTCGCAGCCTGAAATCAAAATTTATGGCATTAAAAAATCAGAATGGCAAAGTTACATATGGAGACTTGCCACCTGTAATGGCAAATTTGAAAGCATTTAAGGAAATGTACACTGGGAAGGAGATTGAGGGGGTATTGGTTGAAAAAAGCCCCGACTTGAGTGATGAGATTGATTTTGAATCTTTCTTAAGGGTATATTTGAATTTACAGAGCCTAGCTACACCAAAACAAGGTGTTACAAAGAACTCTTCGTCATTCCTTAAGGCAGCCACAACCACTCTTCTTCACACCATCAGTGAATCAGAAAAGGCATCTTATGTTGCTCACATAAACAGCTACCTTGGTGATGACCCGTTTATGAGTCAATATCTTCCTTTAGACCCAGCTACCAATGATTTAATTGATCTTGCAAAAGATGGAGTTCTTCTGTGTAAACTTATCAATGTTGCTGTGCCTGGGACTATAGATGAGCGAGCCATCAATGCCAAAAAAATTCTTAATCTTTGGGAGAGGAATGAAAACCATACTCTCTGCCTCAATTCTGCCAAGGCTATAGGCTGCACTGTAGTTAACATTGGCACACAGGACCTTGTTGAAGGAAGACCCCATCTTCTTTTAGGGCTGATTTCCCAGATCATAAAGATCCAATTATTGGCAGATCTAAACCTTAGAAAGACACCTCAGCTTGTTGAATTGGTGGAGGATAGCCAGGAGGTTGAAGAACTTCTTAGTTTGCCTCCTGAAAAGGTTCTATTAAAATGGATGAATTTTCATCTCCATAGAGGAGGGTACGAGAAAACTGTTAAAAATTTTTCTTCTGATGTGAAGGATGCAAGAGCATATGCTTATCTGCTTAATGTCCTCGCTCCTGAACATTGCAACCCATCCACCTTGGATACTAATGATAACGTTCAAAGAGCAGAACTTGTGCTTGATCATGCAGAAAGAATGGGCTGCAAAAGATACTTGACACCCAAGGACATCGTGGATGGTTCCTCAAATCTGAATCTTGCATTTGTGGCCCAAATTTTTCAAAAGAGGAGTGGCTTATCTACAGACAATAAAAAGGTATCTTTCGCTGAGATGATGACAGATGATGTGCAAACATCTAGAGAAGAGAGATGCTTCAGGCTGTGGATCAATAGCCTTGGAATTGGGACTTACGTAAATAACGTATTTGAGGATGTCAGAAATGGATGGATACTTCTTGAGGTGTTAGACAAGATTTCTCCAGGATCGGTTCACTGGAAACATGCAACAAGACCTCCAATTAAGATGCCATTTAGAAAAGTAGAGAACTGCAATCAGGTCATAAAAATTGGGAAACAACTGAGGTTTTCGCTAGTTAATGTAGCTGGCAATGACATTGTGCAAGGAAATAAGAAGCTAATTCTTGCCTTCTTGTGGCAATTGATGAGATTCACTATGCTTCAACTACTGAAAAATTTGAGATCTCATTCCCAAGGAAGGGAGATCACTGATGCTGATATCCTGAAATGGGCAAACAGAAAAGTGAAGAGCACTGGGAGAACTTCCCACATGGAGAGTTTTAAGGATAAGAGCTTGTCAAATGGAATCTTTTTTCTTGAGCTTCTCAGTGCTGTAGAGCCCAGGGTTGTCAATTGGAATCTGGTTACAAAGGGTGCAAGTGATGATGAGAAGAAGTTGAATGCTACCTACATAATCAGTGTTGCTCGAAAGCTAGGTTGTTCCATCTTTTTGTTACCTGAGGATATTATAGAGGTTAATCAGAAGATGATTCTAACTCTTACAGCCAGTATAATGTACTGGAGTCTGCAACAGTCAGGCGAAGATTCAGACTCATTCCCTTCACCGGCTTCCACCATCACCAATAATACTCCTGATGCATCACCCGCCCCATCAGTTTGCGGCGAAGATGAAATCTCCTCCCTTGGAGGCGAATTCTCCAACTTAAGCATCGATGATTCTGCCTCTGACACAACAGTTTCCTCACAACTTGAATATGAAGGGGCTGAAGAGGATAATCGAAAGTGA 2082 0.4078 MSNFVGVIVSDQFLQSQFTQFELRSLKSKFMALKNQNGKVTYGDLPPVMANLKAFKEMYTGKEIEGVLVEKSPDLSDEIDFESFLRVYLNLQSLATPKQGVTKNSSSFLKAATTTLLHTISESEKASYVAHINSYLGDDPFMSQYLPLDPATNDLIDLAKDGVLLCKLINVAVPGTIDERAINAKKILNLWERNENHTLCLNSAKAIGCTVVNIGTQDLVEGRPHLLLGLISQIIKIQLLADLNLRKTPQLVELVEDSQEVEELLSLPPEKVLLKWMNFHLHRGGYEKTVKNFSSDVKDARAYAYLLNVLAPEHCNPSTLDTNDNVQRAELVLDHAERMGCKRYLTPKDIVDGSSNLNLAFVAQIFQKRSGLSTDNKKVSFAEMMTDDVQTSREERCFRLWINSLGIGTYVNNVFEDVRNGWILLEVLDKISPGSVHWKHATRPPIKMPFRKVENCNQVIKIGKQLRFSLVNVAGNDIVQGNKKLILAFLWQLMRFTMLQLLKNLRSHSQGREITDADILKWANRKVKSTGRTSHMESFKDKSLSNGIFFLELLSAVEPRVVNWNLVTKGASDDEKKLNATYIISVARKLGCSIFLLPEDIIEVNQKMILTLTASIMYWSLQQSGEDSDSFPSPASTITNNTPDASPAPSVCGEDEISSLGGEFSNLSIDDSASDTTVSSQLEYEGAEEDNRK 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1539 693 Pfam Calponin homology (CH) domain 145 237 IPR001715 GO:0005515
Lele25g1539 693 Pfam Calponin homology (CH) domain 394 496 IPR001715 GO:0005515
Lele25g1539 693 Pfam Calponin homology (CH) domain 268 369 IPR001715 GO:0005515
Lele25g1539 693 Pfam Calponin homology (CH) domain 516 617 IPR001715 GO:0005515
Lele25g1539 693 Gene3D - 118 244 IPR036872 -
Lele25g1539 693 ProSiteProfiles Calponin homology (CH) domain profile. 392 498 IPR001715 GO:0005515
Lele25g1539 693 Gene3D - 245 373 IPR036872 -
Lele25g1539 693 SMART ch_5 124 237 IPR001715 GO:0005515
Lele25g1539 693 SMART ch_5 269 368 IPR001715 GO:0005515
Lele25g1539 693 SMART ch_5 394 496 IPR001715 GO:0005515
Lele25g1539 693 SMART ch_5 515 619 IPR001715 GO:0005515
Lele25g1539 693 CDD CH 268 368 IPR001715 GO:0005515
Lele25g1539 693 SUPERFAMILY Calponin-homology domain, CH-domain 120 618 IPR036872 -
Lele25g1539 693 CDD CH 514 621 IPR001715 GO:0005515
Lele25g1539 693 CDD CH 393 495 IPR001715 GO:0005515
Lele25g1539 693 MobiDBLite consensus disorder prediction 661 684 - -
Lele25g1539 693 ProSitePatterns Actinin-type actin-binding domain signature 2. 211 235 IPR001589 -
Lele25g1539 693 ProSiteProfiles Calponin homology (CH) domain profile. 513 621 IPR001715 GO:0005515
Lele25g1539 693 MobiDBLite consensus disorder prediction 628 647 - -
Lele25g1539 693 FunFam Fimbrin-2 like 118 244 - -
Lele25g1539 693 Gene3D - 506 618 IPR036872 -
Lele25g1539 693 ProSiteProfiles Calponin homology (CH) domain profile. 122 239 IPR001715 GO:0005515
Lele25g1539 693 Gene3D - 388 505 IPR036872 -
Lele25g1539 693 ProSiteProfiles Calponin homology (CH) domain profile. 267 370 IPR001715 GO:0005515
Lele25g1539 693 CDD CH 123 237 IPR001715 GO:0005515
Lele25g1539 693 FunFam Fimbrin-1 isoform A 506 618 - -
Lele25g1539 693 MobiDBLite consensus disorder prediction 628 693 - -
Lele25g1539 693 PANTHER FIMBRIN/PLASTIN 1 623 IPR039959 GO:0051015|GO:0051017
Lele25g1539 693 FunFam Fimbrin-2 like 388 505 - -
Lele25g1539 693 FunFam Fimbrin-2 isoform A 245 373 - -
Lele25g1539 693 SUPERFAMILY EF-hand 15 95 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1539 Lele-ChrLele25 12285348 12291493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1539 1 691 EF-hand Containing Proteins AT5G55400 70.496 0.0 1003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1539 25 12285348 12291493 Lele27g0546 27 12967514 12973653 hybridization
Lele25g1539 25 12285348 12291493 Lele28g1546 28 12722861 12728899 hybridization