Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00020 ATGTCAAGCTTCATAGGTGTTATAGTTTCTGATCAATGGCTTCAAAGTCAATTTACCCAAGTCGAACTGCGTAGTCTGAAATCAAAATTTACCTCTGCGAAGAATCAGAATGGAAAAGTAATAGTTGGAGACTTGCCGCCACTTATGGTGAAATTAAATGCATTCAAGGAAACATACACTGACGACGAAATACGGACGGTTTTAACTAATTCAGGCTCTGATTTGAACTCTGAGATTGATTTTGAAGGCTTCTTGAGAGTGTATTTGAACTTGCGTAGCCAGACTACTGCAAAGAAGGGTGGAACAAAGCACCCTTCTGCATTCCTCAAAGCAACGACAACCACCCTGCTTCACACAATTAGTCAATCTGAAAGAGCCATTTATGTTGCTCATATAAACAGCTATCTTGGCGATGACCCCTTTCTGCAGCAATTTCTTCCCCTAGATCCAACTACAAATGATCTTTTTGAGCTTGCAAAGGATGGCGTTCTCCTTTGCAAGCTTATCAATGTTGCTGTGCCTGGGACTATAGATGAGCGAGCTATCAATGCAAAACGTGTTCTTAATCTATGGGAGAGGAATGAGAACCATACGTTATGTCTCAACTCTGCTAAGGCTATTGGATGCACTGTGGTGAACATTGGTACACAGGACCTCGTTGAAGGAAGACCCCATTTGATTCTAGGATTGATTTCACAAATCATAAAGATTCAACTTTTGGCGGATCTCAATTTAAAGAAAACACCTCAGCTTGTAGACTTGGTGGAAGACAGCGATGAGGTTGAAGAGCTTATGAGATTACCTCCTGAAAAGGTTCTCTTGAAATGGATGAACTTCCATCTCCAGAAAGCCGGCTACAAGAAAACTGTAACAAACTTTTCATCTGATGTGAAGGATGCAGAGGCTTATGCTTACCTGCTTAATGTTCTTGCTCCGGAGCATTGCAATCCTTCCACTTTGGATACAAAAGATCCCATCCAAAGAGCAAAATATGTCCTAGATCATGCTGAGAAAATGGGTTGTAAAAGATATTTAACAGCAAAGGACATTGTTGAGGGGTCTTCAAATCTCAATCTAGCATTTGTGGCACAGATATTTCACAAAAGGAATGGCCTGTCTACAGACAACAAAAACATTTCTTTTGCTGAGATGATGACGGAAGATGTGCAAACCTGTAGAGAAGAGAGATGTTTCCGCCTGTGGATCAACAGTTTAGGAATTAGTAGTTATGTTAATAATGTATTTGAGGATGTGAGAAATGGATGGATACTTCTAGAAGTGCTTGACAAGATTTCTCCTGGGTCTGTGAACTGGAAACACGCATCAAAACCTCCTATTAAAATGCCATTCAGAAAAGTAGAAAATTGCAATCAGGTTGTCAAAATTGGGAAGCAACTGAGGTTATCACTTGTCAACGTGGGTGGAAATGATATTGTGCAGGGAAATAAGAAGCTGATTCTTGCTTTCCTATGGCAGCTAATGAGATTCAACATGCTTCAACTTTTGAAGAATTTGAGATCTCACTCGCCTGCAAAGGAGATGACAGATTCTGATATACTAAACTGGGTGAACAGAAAAGTGAAAAGCACAGGCAGAATATCTAGGATAGATAGTTTCAAGGATAAAAGTTTGTCAAATGGAATTTTCTTCCTTGAGCTTCTCAGTGCAGTGGAGCCCAGGGTTGTAAATTGGAATCTGGTTACCAAGGGAGAAAGTGACGATGAGAAGAGGTTGAATGCAACATACATAATCAGTGTTGCAAGGAAGCTTGGCTGTTCGATATTTTTGTTGCCTGAAGACATCATGGAGGTAAACCAGAGGATGATCCTCACTCTCGCTGCCTGTATTATGTATTGGAGCTTGCAACGGTCCGCTGAGGATGCAGAGTTGTCTCCATTGCCAGCTGAGACAACTGCTGCTACCCGCACTCCGGATGCATCTCCAGCACCATCAGTTAGTGGTGAAGATGAAAACTCCTCACTCTTTGGTGACGTTTCAAACTTAAGTGTTGATGATGCTACCTCTGATTCAACAGTTTCCTCACAACATGATAATGACGGACTCGGCATTGGAGATGAACCATAA 2085 0.4129 MSSFIGVIVSDQWLQSQFTQVELRSLKSKFTSAKNQNGKVIVGDLPPLMVKLNAFKETYTDDEIRTVLTNSGSDLNSEIDFEGFLRVYLNLRSQTTAKKGGTKHPSAFLKATTTTLLHTISQSERAIYVAHINSYLGDDPFLQQFLPLDPTTNDLFELAKDGVLLCKLINVAVPGTIDERAINAKRVLNLWERNENHTLCLNSAKAIGCTVVNIGTQDLVEGRPHLILGLISQIIKIQLLADLNLKKTPQLVDLVEDSDEVEELMRLPPEKVLLKWMNFHLQKAGYKKTVTNFSSDVKDAEAYAYLLNVLAPEHCNPSTLDTKDPIQRAKYVLDHAEKMGCKRYLTAKDIVEGSSNLNLAFVAQIFHKRNGLSTDNKNISFAEMMTEDVQTCREERCFRLWINSLGISSYVNNVFEDVRNGWILLEVLDKISPGSVNWKHASKPPIKMPFRKVENCNQVVKIGKQLRLSLVNVGGNDIVQGNKKLILAFLWQLMRFNMLQLLKNLRSHSPAKEMTDSDILNWVNRKVKSTGRISRIDSFKDKSLSNGIFFLELLSAVEPRVVNWNLVTKGESDDEKRLNATYIISVARKLGCSIFLLPEDIMEVNQRMILTLAACIMYWSLQRSAEDAELSPLPAETTAATRTPDASPAPSVSGEDENSSLFGDVSNLSVDDATSDSTVSSQHDNDGLGIGDEP* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00020 694 ProSiteProfiles Calponin homology (CH) domain profile. 267 370 IPR001715 GO:0005515
Pte8g00020 694 ProSiteProfiles Calponin homology (CH) domain profile. 392 498 IPR001715 GO:0005515
Pte8g00020 694 MobiDBLite consensus disorder prediction 630 694 - -
Pte8g00020 694 ProSiteProfiles Calponin homology (CH) domain profile. 122 239 IPR001715 GO:0005515
Pte8g00020 694 PANTHER FIMBRIN/PLASTIN 1 623 IPR039959 GO:0051015|GO:0051017
Pte8g00020 694 Gene3D - 245 373 IPR036872 -
Pte8g00020 694 Pfam Calponin homology (CH) domain 150 237 IPR001715 GO:0005515
Pte8g00020 694 Pfam Calponin homology (CH) domain 516 617 IPR001715 GO:0005515
Pte8g00020 694 Pfam Calponin homology (CH) domain 268 369 IPR001715 GO:0005515
Pte8g00020 694 Pfam Calponin homology (CH) domain 395 496 IPR001715 GO:0005515
Pte8g00020 694 CDD CH_AtFIM_like_rpt2 259 367 - -
Pte8g00020 694 SUPERFAMILY Calponin-homology domain, CH-domain 121 618 IPR036872 -
Pte8g00020 694 SUPERFAMILY EF-hand 13 96 IPR011992 -
Pte8g00020 694 SMART ch_5 124 237 IPR001715 GO:0005515
Pte8g00020 694 SMART ch_5 269 368 IPR001715 GO:0005515
Pte8g00020 694 SMART ch_5 515 619 IPR001715 GO:0005515
Pte8g00020 694 SMART ch_5 394 496 IPR001715 GO:0005515
Pte8g00020 694 MobiDBLite consensus disorder prediction 636 685 - -
Pte8g00020 694 FunFam Fimbrin-2 like 388 505 - -
Pte8g00020 694 FunFam Fimbrin-1 isoform A 506 618 - -
Pte8g00020 694 CDD CH_AtFIM_like_rpt1 123 238 - -
Pte8g00020 694 CDD CH_AtFIM_like_rpt3 390 503 - -
Pte8g00020 694 FunFam Fimbrin-2 isoform A 245 373 - -
Pte8g00020 694 Gene3D - 388 505 IPR036872 -
Pte8g00020 694 Gene3D - 118 244 IPR036872 -
Pte8g00020 694 Gene3D - 507 618 IPR036872 -
Pte8g00020 694 FunFam Fimbrin-2 like 118 244 - -
Pte8g00020 694 ProSitePatterns Actinin-type actin-binding domain signature 2. 211 235 IPR001589 -
Pte8g00020 694 ProSiteProfiles Calponin homology (CH) domain profile. 513 621 IPR001715 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00020 Pte-Chr8 529456 534891 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte8g00020 1 687 EF-hand Containing Proteins AT5G55400 71.429 0.0 1033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00020 K17275 - qsa:O6P43_013630 1135.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte8g00020 8 529456 534891 Pte8g00020 8 529456 534891 RCT