Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3528 ATGAAGAGGGGCAGGGCATCATCTTCGGATGATGATGCTGAGGCTGAGGTTCAGTCACTCTCTGTGTCAGATTACCACCTTGTAGACGATGAAGACGTGGCTGTATCTTTTGCTGTGTTGCCAATTCAGTGGAGTGATTCTGAGAGCTCTGCTGCCAGCGAAGGGAAGGTGTTCCTACGCGGGTTCGCCGATGATGGGCCGCGGAAGATTTTCACGCAAGTCACGGCGTGGAGATTTGATCTTTCCAATGTGAGACCCGAGATGTCCTTGCTATCGAAGGATGGAAGGTGGATCAAGCTTCAGAAGCCTAGGAAGAGCTTTCAGGATACTGTAAGGACCATTCTGACCACCCTTCACTTCCTgcatcgtgtgaagaaaaaacGTCAAATGTCTGCGGTATCTGTCTGGCAAGACCTGTGTAAGGATAAGGAGTTgagCTCTTATGGGTTTAAGCCTTCACAGAATGATTTATTGGACCATGTGCCTTTGATCGGTGAAGCTGCCAAAAGGCATGCTGTCTTAGTTAAGTCCAAGCTTTTGCTCATGGTTTTGGAGAAACTGAAGAGTCAAAAACTTCTTGATAAGGAAGTTAACAATTTGGCACAGCCTGGACTTACACTTGTTGGAATTGACAGTGATATGATAGACGAATCTAATGAAGAGTCAGATGAAAGGGATAATTTGGATGTTTGTGCACTTTGTGACAATGGTGGTAATGTTGCGTGTTGTGATGGAGTGTGCATGAGGTCATTTCATGCTACTGAGGAGGCTGGTAGAGAAAATAATTGTGTTTCTCTTGGTTTTACCCAGAAGGAAGTTGATGAGATCCAGAGCTTTTATTGTAAGAATTGTGAATATCGTCAGCACCAATGCTTTGCATGTGGCAAGCTGGGGTCTTCTGATAAAGTTAAGGGTGCTGAGGTTATTAAATGTGCTTCTGCGACCTGTGACCGTTTTTATCATCCACATTGTGTTGCTAAGTTACTTCCCCAGGTAGTTAAGCATGTTGCAGAGGAACTTGAGAGAAATATTGCTGATGGGGATCCTTTTACTTGCCCCCTTCATTATTGCTGTGTCTGTAAAGAATTGGAAAATAAGATGGATCCTGAGTTGCAATTTGCTGTTTGTAGGCGTTGTCCGAAGTCATATCATCGCAAATGTTTGCCTAGAAATCATGAGATTGATCATGAACTTGGGACTCCTATAAGAGATCATATAAAATTCCCCAATATGAAATCTATTGTCCAAGAAATTAATACTACTACAGAGCGGAAGAAACCTGCAACTAAAGAGAGGGTtatattgaagaagaaaaatgtcaACTTAGATAATTCATCTGGCAAAAGCACTGCTAAAGGATCTAAATTGACTGGAAAACTGTCTTCTGACAAAGTTGTTAGCAACAAGTCTAATAAGATGATTTCTGGTTCAAATATCTCAAGAAAGCCAAAATCAAAGGAACCATCAAGAAGGTGTTCAACTGACAATAAGAGGTCAATCTCAGAGAAATTTGAAATGCCTGACTGTGAGCAAAACCATAACCAGCCTACAGTGGGTGAGAAATTATATGCTCTCAAGAATGAGGGTTTGGAGCGAATTGAGCATGACAATCAGGTTAATAATGTGATTACTAAGTCCTTGTTTGTCAAGCCTCCATTGGATGCTTATTCAAAAAAGAGTTTGTTGGCTTTGTTTAAAGAAGCTAGATCATCAATTACAATGAAGAGTGTCTTAGAAAAGCACACATTTGCTTCTACTCATACTCACTCGCTGAGAAATGTTGTGGAGAAGACCATTACAATGGGGAAGCTGGAAGGCTCAGTTGATGCTGTTCGAACAGCTTTAAGGAAGCTAGAGAGTGGGTGCAGCATTCAGGATGTAGAAGCTGTTTGTGACCCTGATGTTCTGAAACAGATATTTATGTGGAAGGACAAGCTGAAAATATATCTTGCACCCGTTCTATATGGTAACCGCTATACATCATATGGTCGCCATTTTACACTTGTGGAGAAGCTGGAAGGGATTGTTGATAAACTTCATTGGTATGTTCAGAACAGTGATATGATTGTGGACTTCTGCTGTGGAGCTAATGATTTTAGCATCCTTTTGAAGAAAAAGCTTGAGGAGACTGAGAAGAAATGCTCATACAGAAACTATGATTTACTTCCAACAAAGAATGATTTTAGTTTCGAAAGGAGGGATTGGATGACTGTCCAACCAACCGAGTTGCCGACAGGGTCACAGTTGATCATGGGGCTCAACCCCCCCTTTGGGCGTAAAGCAGCATCGGCTAACAAGTTTATAGATAAGGCTCTTGAGTTTAAACCAAAGCTTCTTATTCTTATAGTACCACCAGAGACAGAGAGGCTTGATAAAAAACTATCACCATATGATCTTATATGGGAGGATGAGAATTTTCTATCAGGCACGTCATTTTATCTGCCTGGATCAGTTGATGTAAGTGACAAACAGATGGACCAAAGGAATGTTAGGCCGCCTCTACTCTCCCTTTGGAGTCGTCCTGACTGGACTCCTAAACACAAGGTCATAGCTCAAGAGCACGGTCATGTGTGCAGGCAGCATGAATTATTAGAGACAGAAAGCTTTAATACTGACATGTTGGCTGCTGCTGATCATGCTACGGATGGAAATTACGCTGACAATTTAAAGTCAACTGATGATCGAGAACATCAAGCATCTATAAGTGAAGGTCAGAAAAGAAGCTTCCATTATGGTAATGTTGACAAAGAGAGTCAAGAGGGACAGCAATATAGGATGGGCAAATCTGGCAAGTCACCAcggaaaagaaaacatattgaggaaaataatagaacACTAGTAGGTGTGGTCTCGCCAGCCAAAAGAAAGGCTGTAAATGGAATGCCTGAGGGAGTACCTGACCATAGTCAACCCAATCCAATCAATGGGAGACCCTCAGGTGAAGGTCTTCGGCCCAAATCTGTTGCGGCCTGTCCACGTGTTGAGGTTGATGGTCTTTCAGGTGATGATCCTTCCTGTGGCCACTTGGGTAATAATAATGAGCAAGTAGTTTCAGTACCTGAGTCATCTTGTAAGACGAATACACCAGCTATTGGACGATGTGAACCTCGCCTAGGTGAATTAAACCATGGCAAGAGAAGTTCTTTGGGTTCTCAACCTCGTACATTCAGTAAAAGTGACACTCTTGGACGTAGTGTACCCCCACCTGGAAATGGTGGTGGGTTGCGTGGTTTTGCTTCTGGTACTAACTATGTATATGCACGCCAGCATTCGTGTGGTTGGCTCGATGAGTAG 3294 0.4174 MKRGRASSSDDDAEAEVQSLSVSDYHLVDDEDVAVSFAVLPIQWSDSESSAASEGKVFLRGFADDGPRKIFTQVTAWRFDLSNVRPEMSLLSKDGRWIKLQKPRKSFQDTVRTILTTLHFLHRVKKKRQMSAVSVWQDLCKDKELSSYGFKPSQNDLLDHVPLIGEAAKRHAVLVKSKLLLMVLEKLKSQKLLDKEVNNLAQPGLTLVGIDSDMIDESNEESDERDNLDVCALCDNGGNVACCDGVCMRSFHATEEAGRENNCVSLGFTQKEVDEIQSFYCKNCEYRQHQCFACGKLGSSDKVKGAEVIKCASATCDRFYHPHCVAKLLPQVVKHVAEELERNIADGDPFTCPLHYCCVCKELENKMDPELQFAVCRRCPKSYHRKCLPRNHEIDHELGTPIRDHIKFPNMKSIVQEINTTTERKKPATKERVILKKKNVNLDNSSGKSTAKGSKLTGKLSSDKVVSNKSNKMISGSNISRKPKSKEPSRRCSTDNKRSISEKFEMPDCEQNHNQPTVGEKLYALKNEGLERIEHDNQVNNVITKSLFVKPPLDAYSKKSLLALFKEARSSITMKSVLEKHTFASTHTHSLRNVVEKTITMGKLEGSVDAVRTALRKLESGCSIQDVEAVCDPDVLKQIFMWKDKLKIYLAPVLYGNRYTSYGRHFTLVEKLEGIVDKLHWYVQNSDMIVDFCCGANDFSILLKKKLEETEKKCSYRNYDLLPTKNDFSFERRDWMTVQPTELPTGSQLIMGLNPPFGRKAASANKFIDKALEFKPKLLILIVPPETERLDKKLSPYDLIWEDENFLSGTSFYLPGSVDVSDKQMDQRNVRPPLLSLWSRPDWTPKHKVIAQEHGHVCRQHELLETESFNTDMLAAADHATDGNYADNLKSTDDREHQASISEGQKRSFHYGNVDKESQEGQQYRMGKSGKSPRKRKHIEENNRTLVGVVSPAKRKAVNGMPEGVPDHSQPNPINGRPSGEGLRPKSVAACPRVEVDGLSGDDPSCGHLGNNNEQVVSVPESSCKTNTPAIGRCEPRLGELNHGKRSSLGSQPRTFSKSDTLGRSVPPPGNGGGLRGFASGTNYVYARQHSCGWLDE 1097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3528 1097 PANTHER ENHANCED DOWNY MILDEW PROTEIN 391 964 - -
Ssu6g3528 1097 CDD PHD2_NSD 290 355 - -
Ssu6g3528 1097 MobiDBLite consensus disorder prediction 916 936 - -
Ssu6g3528 1097 MobiDBLite consensus disorder prediction 423 438 - -
Ssu6g3528 1097 MobiDBLite consensus disorder prediction 961 984 - -
Ssu6g3528 1097 MobiDBLite consensus disorder prediction 483 500 - -
Ssu6g3528 1097 SMART PHD_3 290 356 IPR001965 -
Ssu6g3528 1097 SMART PHD_3 357 397 IPR001965 -
Ssu6g3528 1097 SMART PHD_3 230 285 IPR001965 -
Ssu6g3528 1097 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 391 964 - -
Ssu6g3528 1097 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 1011 1091 - -
Ssu6g3528 1097 MobiDBLite consensus disorder prediction 1035 1078 - -
Ssu6g3528 1097 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 226 287 IPR013083 -
Ssu6g3528 1097 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 8 391 - -
Ssu6g3528 1097 Pfam Cytosine specific DNA methyltransferase replication foci domain 21 129 IPR022702 -
Ssu6g3528 1097 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 288 377 IPR013083 -
Ssu6g3528 1097 MobiDBLite consensus disorder prediction 1045 1064 - -
Ssu6g3528 1097 CDD PHD_SF 356 388 - -
Ssu6g3528 1097 ProSitePatterns Zinc finger C2H2 type domain signature. 376 396 IPR013087 -
Ssu6g3528 1097 MobiDBLite consensus disorder prediction 418 500 - -
Ssu6g3528 1097 SUPERFAMILY FYVE/PHD zinc finger 216 288 IPR011011 -
Ssu6g3528 1097 PANTHER ENHANCED DOWNY MILDEW PROTEIN 1011 1091 - -
Ssu6g3528 1097 PANTHER ENHANCED DOWNY MILDEW PROTEIN 8 391 - -
Ssu6g3528 1097 MobiDBLite consensus disorder prediction 439 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3528 Ssu-Chr6 78436326 78450673 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3528 - - gmx:100806429 1600.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3528 6 78436326 78450673 Ssu6g3528 6 78436326 78450673 ECH