Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00246 ATGTCTGGTCACTGGGGGATTCTTGTTTCAGATCCATGTCTTCAGAATCAGTTCACACAAGTTGAACTTAGAAGCTTAAAAAACCatTTCATGAGCATGAGGAGGGAAAGTGGGAAGCTTGTGATTGCAGATTTAGCTTCTAAGATGTCAAGATTGAAAGTTGTGGGAGAAAATCTGAGTGAAGAGGAGAGAGCTTCTTATGTGCATGATTTGTATCAGAACACTGACGAGGATGTtgattttgaattgtttctCAAGGTTTACTTGAAGCTACAAACATTTGCGAATTCTAGAACAGGAAGTAGTCCAAAGAATTCCTCGGCATTTTTAAAAGCAGCTACTACTACATTGCTTCACACAATAAGTGAATCTGAGAAATCATCATATGTTACTCATATAAATCACTATCTTTCACAAGATGAGTTCCTCAACAAGTACCTTCCTATTGATCCTTCAACCAATGAGCTCTTCGAAATTGCAAAAGACGGCGTTCTTCTTTGCAAGCTTATCAATGTGGCAGTTCCGGGGACTATTGACGAACGTGCGATCAATACGAAAAGATTACTCAATCCATGGGAAAGGAATGAAAATCACACACTTTGTCTTAACTCTGCTAAAGCCATTGGATGTACTGTAGTCAACATTGGCACACAAGACTTCATTGAAGGAAGGCGTCATCTGGTACTTGGTGTGATATCACAGATTATTAAGATACAACTATTGGCAGACCTTAATCTAAAGAAAACTCCTCAGCTGCTTGAGTTGCTTGATGATAGTAAGGATATGGAAGAGTTGATGAATCTACCACCAGAAAAGATTTTGTTAAGGTGGATGAATTTCCATTTGAAGAAATCAGAGTACAAGAAGATTGTCACTAACTTCTCCTCTGATGTTAAGGATGCTGAGGCTTATGCACATCTTCTAAATGTTCTTGCACCAGAATACACTAATCCTTCCACATTGGCTGTAAAAAATCCCTTTGAAAGAGCAAAGTTAGTTCTTGAACATTCCGATAAAATGGGCTGCAAGCGATACCTAACTGCAAGAGACATTGTCGAAGGATCTCCAAATCTTAATCTTGCTTTTGTTGCACATATTTTCCAGCACAGGAATGGACTTACAGACCAGACAAAGCAGATTTCTCTCCTTCAAGCATTGCCTGACGACACCGAAGACTCTAGAGAAGAGAGAGCATTTCGCCTTTGGATTAATAGCCTTGGAAATTCAACATATATCAACAATGTCTTTGAGGATCTCAGAAACGGATGGATTCTTTTAGAGACTCTTGATAAGGTGTCAGCAGGAATTGTGAATTGGAAGATTGCAAACAAGCCTCCAATTAAGATGCCATTTAAGAAAGTTGAGAATTGCAACCAAGTTGTGAAAATAGGGAAACAACTTAAATTCTCTTTGGTAAACGTTGCTGGAAACGACATTGTGCAGGGAAATAAAAAGTTAATACTAGCTTATCTGTGGCAATTGATGCGATACAACATTCTTCAACTTCTAAAGAACTTACGATTTCACGCTCGCGGGAAGGAAATAACTGATGCTGATATTTTGGAATGGGCTAACGGCAAAGTTAGCAGCACAGGAAGTCAAAGCAGCATGAACAGTTTTAAGgaCAAAAGTTTATCAGATGGAATATTTTTCCTTGAACTTCTTAGTTCTGTGCAGCCTAGAGCTGTAAATTGGGGACTTGTAACAAAAGGAGTAACTGatgaagagaaaaagatgaatgCCAGCTACATCATAAGTATTGCAAGAAAGCTAGGTTGTTCAATATTCTTGCTTCCTGAAGACATCACTGAGGTGAATCAAAAGATGATCCTTACTTTAACAGCTAGTATAATGTCTTGGTTTCTAAAACACCCTCATGAAGAAAGAACATTGGGAACTTCAGATAGTGAAAGTGGAAGTCAATTGGAGACTATATCAAATTCAACACTAGATGACTTTTCTTCTGATTCATCTGTTGATGAAAATGGAAACATGTAA 1998 0.3759 MSGHWGILVSDPCLQNQFTQVELRSLKNHFMSMRRESGKLVIADLASKMSRLKVVGENLSEEERASYVHDLYQNTDEDVDFELFLKVYLKLQTFANSRTGSSPKNSSAFLKAATTTLLHTISESEKSSYVTHINHYLSQDEFLNKYLPIDPSTNELFEIAKDGVLLCKLINVAVPGTIDERAINTKRLLNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVLGVISQIIKIQLLADLNLKKTPQLLELLDDSKDMEELMNLPPEKILLRWMNFHLKKSEYKKIVTNFSSDVKDAEAYAHLLNVLAPEYTNPSTLAVKNPFERAKLVLEHSDKMGCKRYLTARDIVEGSPNLNLAFVAHIFQHRNGLTDQTKQISLLQALPDDTEDSREERAFRLWINSLGNSTYINNVFEDLRNGWILLETLDKVSAGIVNWKIANKPPIKMPFKKVENCNQVVKIGKQLKFSLVNVAGNDIVQGNKKLILAYLWQLMRYNILQLLKNLRFHARGKEITDADILEWANGKVSSTGSQSSMNSFKDKSLSDGIFFLELLSSVQPRAVNWGLVTKGVTDEEKKMNASYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMSWFLKHPHEERTLGTSDSESGSQLETISNSTLDDFSSDSSVDENGNM 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00246 665 PANTHER ACTIN-BINDING CALPONIN-LIKE (CH) DOMAIN PROTEIN 1 665 - -
Tsu08g00246 665 Pfam Calponin homology (CH) domain 395 498 IPR001715 GO:0005515
Tsu08g00246 665 Pfam Calponin homology (CH) domain 144 237 IPR001715 GO:0005515
Tsu08g00246 665 Pfam Calponin homology (CH) domain 269 370 IPR001715 GO:0005515
Tsu08g00246 665 Pfam Calponin homology (CH) domain 517 621 IPR001715 GO:0005515
Tsu08g00246 665 ProSiteProfiles Calponin homology (CH) domain profile. 123 240 IPR001715 GO:0005515
Tsu08g00246 665 Gene3D - 246 374 IPR036872 -
Tsu08g00246 665 SUPERFAMILY Calponin-homology domain, CH-domain 121 618 IPR036872 -
Tsu08g00246 665 Gene3D - 119 245 IPR036872 -
Tsu08g00246 665 Gene3D - 507 619 IPR036872 -
Tsu08g00246 665 MobiDBLite consensus disorder prediction 629 665 - -
Tsu08g00246 665 ProSiteProfiles Calponin homology (CH) domain profile. 514 622 IPR001715 GO:0005515
Tsu08g00246 665 ProSiteProfiles Calponin homology (CH) domain profile. 393 499 IPR001715 GO:0005515
Tsu08g00246 665 PANTHER FIMBRIN/PLASTIN 1 665 IPR039959 GO:0051015|GO:0051017
Tsu08g00246 665 ProSiteProfiles Calponin homology (CH) domain profile. 268 371 IPR001715 GO:0005515
Tsu08g00246 665 CDD CH 124 238 IPR001715 GO:0005515
Tsu08g00246 665 SMART ch_5 125 238 IPR001715 GO:0005515
Tsu08g00246 665 SMART ch_5 395 497 IPR001715 GO:0005515
Tsu08g00246 665 SMART ch_5 270 369 IPR001715 GO:0005515
Tsu08g00246 665 SMART ch_5 516 620 IPR001715 GO:0005515
Tsu08g00246 665 CDD CH 515 622 IPR001715 GO:0005515
Tsu08g00246 665 CDD CH 269 369 IPR001715 GO:0005515
Tsu08g00246 665 Gene3D - 389 506 IPR036872 -
Tsu08g00246 665 MobiDBLite consensus disorder prediction 634 665 - -
Tsu08g00246 665 CDD CH 394 497 IPR001715 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00246 Tsu-Chr8 2211657 2216690 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00246 1 624 EF-hand Containing Proteins AT5G55400 64.856 0.0 855
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00246 - K17275 gmx:100799696 1229.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00246 08 2211657 2216690 Tsu08g00246 08 2211657 2216690 ECH
Tsu04g00894 04 8563592 8569375 Tsu08g00246 08 2211657 2216690 PCT