Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00263 ATGTCAAAATTTGAGGGTGTTGTTGTCTCTGATCAATGGCTTCATAGCCAGTTTACGCAGGTTGAACTTCGCAGCCTGAAATCTAAATTTGTCTCTTTAAAGAATCAGAATGGTAAAGTTACATTTGGAGATTTGCCTCCTTTAATGGTGAAGCTAAAGGCATTCAGTGACATGTATAGTCAAGATGAGATTAGGGGGATCCTGGGTGAGTTAGGCACTGATTTTACCGATGACATTGATTTTGAAGCCTTCTTGAGGGCATATTTGAATTTGAGAAGCCAAGCTACAGCAAAACAAGGTGGTAAGAAGCACTCATCAACGTTCCTTAAGGAAACCATAACCACCCTTCTTCACACAATCAGTGAATCAGAGAAAGCCTTTTATGTTGCTCACATAAACAGCTACCTTGGAGATGATCCATTTCTGAAGCAATATCTTCCTCTAGACCCAGCTACAAATGATCTTTTTGATCTCGTAAAAGATGGCGTTCTTCTGTGTAAACTTATCAATGTGGCTGTGCCTGGGACTATAGATGAGAGAGCCATCAATACCAAGAGAAATCCTAGTCTTTGGGAGAGAAATGAGAACCATACTCTATGCCTCAATTCTGCCAAGGCTATTGGCTGCACAGTGGTTAACATTGGCACACAGGATTTAGTTGAAGGAAGGCCTTATCTTGTTCTAGGGTTGATTTCCCAAATCATAAAGATCCAACTGCTGGCAGATCTCAGCCTTAAGAAGTCACCACAGCTTGTGGAATTGGTTGATGACAGCCAGGAGATTGAAGAGCTTCTTAATTTGTCTCCTGAAAAGATTCTGCTAAAATGGATGAATTTTCATCTCCAGAGAGGAGGCTATGAGAAAACTATCAAAAATTTTTCTTCCGACGTTAAGGATGGAGAGGCTTATGCTTATCTGCTTAATGTCCTTGCTCCTGAACACTGTAGTCCAGCCACCTTGGATGCTAAAGATTCCAACGACAGGGCAAATCTGGTTCTTGATCATGCAGAGAGAATGGGATGCAAAAGATACTTGACCCCAAGGGACCTTGTGGAGGGTACCTCAAATCTGAATCTTGCATTTGTCGCACAATTGTATCATCACAGGAGTGGCCTATCCACAGACACTAAAAAGATGTCCTATGCTGAGATGATGACAGATGATGTGCAAACGTCTAGAGAAGAGAGATGCTTCCGGCTGTGGATCAACAGTCTTGGAATTTCTACTTATGTAAATAATCTATTTGAGGATGTCAGAAATGGATGGATACTTCTAGAAGTGCTAGACAAGATTTTTCCAGGATCAGTTAACTGGAAACAGGCAACAAGACCTCCAATTAGAATGCCATTCAGAAAAGTCGAGAATTGCAATCAGGTCATAAAAATTGGTAAACAACTGAGATTCTCACTAGTCAATGTAGCTGGCAATGACATTGTGCAAGGAAATAAGAAGCTCATTCTCGCTCTATTGTGGCAGTTGATGAGATTCACAATGCTTCAACTGTTGAAAAATTTGAGATCACATTCTCAAGGTAAGGAGATCAGTGATGCTGATATCCTGAAATGGGCAAATAGAAAAGTGAAGAGCACCGGCAGAACTTCTCACGTAGAGAGTTTCAAGGATAAGAGCTTGTCAACTGGTCTCTTTTTCCTTGAGCTTCTGAGTGCTGTAGAGCCTAGGGTTGTCAATTGGAACCTTGTCACCAAGGGAGAAAGTGATGATGAGAAGAGGTTGAATGCCACCTATATAATCAGTGTTGCGCGAAAGCTTGGTTGTTCTATCTTTTTGTTGCCTGAGGATATTATGGAGGTTAATCAGAAGATGATTCTAACTCTTACAGCCAGTATAATGTATTGGAGCCTGCAACAACAGGCTGAAGATGCAGATTCACTTCCTTCACCTGGTGATACTGCTACTACCACCACACCTGAAGCATCACCAGCCCCTTCACTTTGTGGTGAAGATGAAAATTCCTCCCTTGGTGGTGAATTCTCCAACTTGAGTGTTGATGATGCCACCTCTGACACAACAGTGTCTTCACAAGTTGAATCTGATGGTGTTCCTGTGGGAGATGAGCTATTATGA 2085 0.4173 MSKFEGVVVSDQWLHSQFTQVELRSLKSKFVSLKNQNGKVTFGDLPPLMVKLKAFSDMYSQDEIRGILGELGTDFTDDIDFEAFLRAYLNLRSQATAKQGGKKHSSTFLKETITTLLHTISESEKAFYVAHINSYLGDDPFLKQYLPLDPATNDLFDLVKDGVLLCKLINVAVPGTIDERAINTKRNPSLWERNENHTLCLNSAKAIGCTVVNIGTQDLVEGRPYLVLGLISQIIKIQLLADLSLKKSPQLVELVDDSQEIEELLNLSPEKILLKWMNFHLQRGGYEKTIKNFSSDVKDGEAYAYLLNVLAPEHCSPATLDAKDSNDRANLVLDHAERMGCKRYLTPRDLVEGTSNLNLAFVAQLYHHRSGLSTDTKKMSYAEMMTDDVQTSREERCFRLWINSLGISTYVNNLFEDVRNGWILLEVLDKIFPGSVNWKQATRPPIRMPFRKVENCNQVIKIGKQLRFSLVNVAGNDIVQGNKKLILALLWQLMRFTMLQLLKNLRSHSQGKEISDADILKWANRKVKSTGRTSHVESFKDKSLSTGLFFLELLSAVEPRVVNWNLVTKGESDDEKRLNATYIISVARKLGCSIFLLPEDIMEVNQKMILTLTASIMYWSLQQQAEDADSLPSPGDTATTTTPEASPAPSLCGEDENSSLGGEFSNLSVDDATSDTTVSSQVESDGVPVGDELL. 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00263 694 FunFam Fimbrin-2 like 388 505 - -
Seca8g00263 694 SUPERFAMILY Calponin-homology domain, CH-domain 120 618 IPR036872 -
Seca8g00263 694 ProSiteProfiles Calponin homology (CH) domain profile. 267 370 IPR001715 GO:0005515
Seca8g00263 694 CDD CH_AtFIM_like_rpt4 513 621 - -
Seca8g00263 694 PANTHER FIMBRIN/PLASTIN 1 624 IPR039959 GO:0051015|GO:0051017
Seca8g00263 694 CDD CH_AtFIM_like_rpt1 123 238 - -
Seca8g00263 694 SMART ch_5 124 237 IPR001715 GO:0005515
Seca8g00263 694 SMART ch_5 515 619 IPR001715 GO:0005515
Seca8g00263 694 SMART ch_5 394 496 IPR001715 GO:0005515
Seca8g00263 694 SMART ch_5 269 368 IPR001715 GO:0005515
Seca8g00263 694 Gene3D - 113 243 IPR036872 -
Seca8g00263 694 MobiDBLite consensus disorder prediction 659 684 - -
Seca8g00263 694 MobiDBLite consensus disorder prediction 627 647 - -
Seca8g00263 694 Pfam Calponin homology (CH) domain 268 369 IPR001715 GO:0005515
Seca8g00263 694 Pfam Calponin homology (CH) domain 151 237 IPR001715 GO:0005515
Seca8g00263 694 Pfam Calponin homology (CH) domain 394 496 IPR001715 GO:0005515
Seca8g00263 694 Pfam Calponin homology (CH) domain 516 617 IPR001715 GO:0005515
Seca8g00263 694 ProSiteProfiles Calponin homology (CH) domain profile. 392 498 IPR001715 GO:0005515
Seca8g00263 694 ProSitePatterns Actinin-type actin-binding domain signature 2. 470 494 IPR001589 -
Seca8g00263 694 ProSiteProfiles Calponin homology (CH) domain profile. 513 621 IPR001715 GO:0005515
Seca8g00263 694 SUPERFAMILY EF-hand 13 95 IPR011992 -
Seca8g00263 694 FunFam Fimbrin-2 isoform A 245 373 - -
Seca8g00263 694 ProSitePatterns Actinin-type actin-binding domain signature 2. 211 235 IPR001589 -
Seca8g00263 694 Gene3D - 506 618 IPR036872 -
Seca8g00263 694 CDD CH_AtFIM_like_rpt3 390 503 - -
Seca8g00263 694 ProSiteProfiles Calponin homology (CH) domain profile. 122 239 IPR001715 GO:0005515
Seca8g00263 694 Gene3D - 388 505 IPR036872 -
Seca8g00263 694 FunFam Fimbrin-1 isoform A 506 618 - -
Seca8g00263 694 Gene3D - 245 373 IPR036872 -
Seca8g00263 694 MobiDBLite consensus disorder prediction 627 694 - -
Seca8g00263 694 FunFam Fimbrin-2 like 118 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00263 Seca-Chr8 3218715 3224885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00263 1 685 EF-hand Containing Proteins AT5G55400 70.756 0.0 1019
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00263 K17275 - gmx:100810854 1266.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g00263 8 3218715 3224885 Seca8g00263 8 3218715 3224885 ECH