Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1546 ATGTCAAATTTTGTGGGCGTTATTGTCTCCGATCAATGGCTTCAAAGTCAGTTTACGCAGTTTGAACTTCGCAGCCTGAAATCAAAATTTATGGCATTAAAAAATAAGAATGGCAAAGTTACATTTGGAGACTTGCCACCTCTAATGGCCAATTTAAAAGCATTTAAAGAAACGTACACTGAGAAGGAGATCGAGGGTGTCTTGGGTGAAAAAAGCCCTGACTTGAGCAACGAGATTGATTTTGAATCTTTCTTAAGGGCATATTTGAATTTGCAGAGCTTAGCTACATCAAAACAAGGTGTTACAAAGAACTCTTCGTCATTCCTTAAGGCAGCCACAACCACTCTTCTTCACACCATCAGTGAATCAGAAAAGGCATCTTATGTTGCTCACATAAACAGCTACCTTGGTGATGACCCGTTTCTGAGTCAATATCTTCCTTTAGACCCAGCTACCAATGATTTAATTGATCTTGCAAAAGATGGAGTTCTTCTGTGTAAACTTATCAATGTTGCTGTGCCTGGGACTATAGATGAGCGAGCCATCAATGCCAAAAAAATTCTTAATCTTTGGGAGAGGAATGAAAACCATACCCTCTGCCTCAATTCTGCCACGGCTATAGGCTGCACTGTAGTTAACATTGGCACACAGGACCTTGTTGAAGGAAGACCCCATCTTGTTTTAGGGCTGATTTCCCAGATCATAAAGATCCAATTATTGGCAGATCTGAACCTTAAGAAGACGCCTCAGCTTGTCGAACTGGTGGAGGATAGCCAGGAGGTTGAAGAGCTTCTTAGTTTGCCTCCTGAAAAGGTTCTACTAAAATGGATGAATTTTCATCTCCAGAGAGGAGGATATGATAAAACTGTTAAAAATTTTTCTTCTGATGTGAAGGATGCAAGAGCTTATGCGTATCTGCTTAATGTCCTCGCTCCTGAACATTGCAACCCATCCACCTTGGATACTGATGATACCATTCAAAGAGCAGAACTTGTGCTTGATCATGCAGAAAGAATGGGCTGCAAAAGATACTTGACACCCAAGGACATCATGGATGGTTCCTCAAATCTGAATCTGGCATTTGTAGCCCAAATATTTCAGCAGAGGAGTGGCTTATCTACAGACAATAAAAAGGTATCTTTCGCTGAGATGATGACAGATGATGTGCAAACATCTAGAGAAGAGAGATGCTTCAGGTTGTGGATCAATAGTCTTGGAATTGGGACTTATGTAAATAATGTATTTGAGGATGTCAGAAATGGATGGATACTTCTGGAGGTGTTAGACAAGATTTCTCCAGGATCGGTTCACTGGAAACATGCAACAAGACCTCCAATTAAGATGCCATTTAGAAAAGTAGAGAACTGCAATCAGGTCATAAAAATTGGGAAACAACTGAGGTTTTCGCTAGTTAATGTAGCTGGCAATGACATAGTGCAAGGAAATAAGAAGCTGATTCTTGCCTTCTTGTGGCAGTTGATGAGATTCACTATGCTTCAACTACTGAAAAATTTGAGATCGCATTCCCAAGGAAGGGAGATCACTGATGCCGATATCCTGAAATGGGCAAACAGAAAAGTGAAGAACACTGGCAGAAATTCCCACATAGAGAGTTTCAAGGACAAGAGCTTGGCAAATGGAATATTTTTTCTTGAGCTTCTCAGTGCTGTAGAGGCCAGGGTTGTTAATTGGAATCTTGTTACTAAGGGTGCAAGTGATGATGAGAAGAAGTTGAATGCTACCTACATAATCAGTGTTGCTCGAAAGCTAGGTTGTTCCATCTTTTTGTTACCTGAGGATATTATAGAGGTTAATCAGAAGATGATTCTCACTCTTACAGCCAGTATAATGTACTGGAGTCTGCAACAGTCAGGCGAAGATTCAGACTCATTCCCTTCACCGGCTTCCACCCTCACCAATAATACTCCTGATGCATCACCCGCCCCATCAGTTTGCGGTGAAGATGAAATCTCCTCCCTCAGCGGTGAATTCTCCACCTTAAGCTTAAGCATCGATGATGCCGCCTCTGACACAACAGTTTCCTCACAACTTGAATATGAAGGAGCTGAAGAGGATCATCTAAAGTGA 2088 0.4138 MSNFVGVIVSDQWLQSQFTQFELRSLKSKFMALKNKNGKVTFGDLPPLMANLKAFKETYTEKEIEGVLGEKSPDLSNEIDFESFLRAYLNLQSLATSKQGVTKNSSSFLKAATTTLLHTISESEKASYVAHINSYLGDDPFLSQYLPLDPATNDLIDLAKDGVLLCKLINVAVPGTIDERAINAKKILNLWERNENHTLCLNSATAIGCTVVNIGTQDLVEGRPHLVLGLISQIIKIQLLADLNLKKTPQLVELVEDSQEVEELLSLPPEKVLLKWMNFHLQRGGYDKTVKNFSSDVKDARAYAYLLNVLAPEHCNPSTLDTDDTIQRAELVLDHAERMGCKRYLTPKDIMDGSSNLNLAFVAQIFQQRSGLSTDNKKVSFAEMMTDDVQTSREERCFRLWINSLGIGTYVNNVFEDVRNGWILLEVLDKISPGSVHWKHATRPPIKMPFRKVENCNQVIKIGKQLRFSLVNVAGNDIVQGNKKLILAFLWQLMRFTMLQLLKNLRSHSQGREITDADILKWANRKVKNTGRNSHIESFKDKSLANGIFFLELLSAVEARVVNWNLVTKGASDDEKKLNATYIISVARKLGCSIFLLPEDIIEVNQKMILTLTASIMYWSLQQSGEDSDSFPSPASTLTNNTPDASPAPSVCGEDEISSLSGEFSTLSLSIDDAASDTTVSSQLEYEGAEEDHLK 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1546 695 MobiDBLite consensus disorder prediction 676 695 - -
Lele28g1546 695 PANTHER FIMBRIN/PLASTIN 1 623 IPR039959 GO:0051015|GO:0051017
Lele28g1546 695 ProSiteProfiles Calponin homology (CH) domain profile. 392 498 IPR001715 GO:0005515
Lele28g1546 695 SUPERFAMILY EF-hand 13 95 IPR011992 -
Lele28g1546 695 SUPERFAMILY Calponin-homology domain, CH-domain 120 618 IPR036872 -
Lele28g1546 695 FunFam Fimbrin-1 isoform A 506 618 - -
Lele28g1546 695 CDD CH 123 237 IPR001715 GO:0005515
Lele28g1546 695 Pfam Calponin homology (CH) domain 516 617 IPR001715 GO:0005515
Lele28g1546 695 Pfam Calponin homology (CH) domain 394 496 IPR001715 GO:0005515
Lele28g1546 695 Pfam Calponin homology (CH) domain 268 368 IPR001715 GO:0005515
Lele28g1546 695 Pfam Calponin homology (CH) domain 145 237 IPR001715 GO:0005515
Lele28g1546 695 ProSiteProfiles Calponin homology (CH) domain profile. 267 370 IPR001715 GO:0005515
Lele28g1546 695 FunFam Fimbrin-2 like 118 244 - -
Lele28g1546 695 Gene3D - 388 505 IPR036872 -
Lele28g1546 695 MobiDBLite consensus disorder prediction 628 656 - -
Lele28g1546 695 CDD CH 393 495 IPR001715 GO:0005515
Lele28g1546 695 Gene3D - 118 244 IPR036872 -
Lele28g1546 695 Gene3D - 506 618 IPR036872 -
Lele28g1546 695 ProSitePatterns Actinin-type actin-binding domain signature 2. 211 235 IPR001589 -
Lele28g1546 695 FunFam Fimbrin-2 isoform A 245 373 - -
Lele28g1546 695 Gene3D - 245 373 IPR036872 -
Lele28g1546 695 MobiDBLite consensus disorder prediction 628 647 - -
Lele28g1546 695 FunFam Fimbrin-2 like 388 505 - -
Lele28g1546 695 ProSiteProfiles Calponin homology (CH) domain profile. 122 239 IPR001715 GO:0005515
Lele28g1546 695 SMART ch_5 124 237 IPR001715 GO:0005515
Lele28g1546 695 SMART ch_5 515 619 IPR001715 GO:0005515
Lele28g1546 695 SMART ch_5 269 368 IPR001715 GO:0005515
Lele28g1546 695 SMART ch_5 394 496 IPR001715 GO:0005515
Lele28g1546 695 CDD CH 268 367 IPR001715 GO:0005515
Lele28g1546 695 ProSiteProfiles Calponin homology (CH) domain profile. 513 621 IPR001715 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1546 Lele-ChrLele28 12722861 12728899 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1546 1 680 EF-hand Containing Proteins AT5G55400 70.605 0.0 1007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1539 25 12285348 12291493 Lele28g1546 28 12722861 12728899 hybridization
Lele26g1554 26 12053930 12060080 Lele28g1546 28 12722861 12728899 hybridization