Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g1291 ATGTCAATTTTTGTGGGTGTTATTGTGTCCGATCATTGGCTTCAAAGCCAGTTTACGCAGGTTGAACTTCGCAGCCTAAAATCAAAATTTATCGCTTTAAAAAATCAGAATGGTAAAGTAACATGTGGAGACTTGCCACCTCTAATGGCGAAGTTGAATGCATTTAGAGAAATGTATACTGAGAAGGAGATTGTGGGGATCTTGGGTGAGTCTGGCACTGACTTGACCGATGAGATTGATTTTGAAGCCTTCTTAAGGGCATATTTGAATTTGCAAAGCCGAGCTACAGCGAAACAAGGTGTTACAAAGAACTCTTCGTCATTCCTTAAGGCAACCACAACCACCCTTCTTCACACCATCAGTGAATCAGAAAAAGCATCTTATGTTGCTCACATAAATAGTTACCTGGGTGATGATCCCTTTCTGAAGCAATTTCTTCCTTTGGACCCAGCTACTAATGATTTATTTGATCTTGCAAAAGATGGAGTTCTTCTGTGTAAACTTATCAATGTTGCTGTGCCTGGGACTATAGACGAGCGAACCATCAACACCAAACGAATTCTTAATCTCTGGGAGAGGAATGAGAACCATACTCTCTGCCTCAATTCTGCCAAGGCTATTGGCTGCACCGTGGTTAACATTGGCACACAGGACCTAGTTGAAGGAAGACCTCATCTTGTTTTAGGGTTAATTTCCCAAATCATAAAGATCCAACTATTGGCAGATCTGAACCTTAAGAAGACGCCGCAGCTTGTGGAATTGGTTGAGGATAGCCAAGAGGTTGAAGAGCTTCTTAGTTTACCCCCTGAAAAGGTTCTGCTAAAATGGATGAATTTTCATCTCCAGAGAGGAGGTTATGAGAAAACTGTTAAAAATTTTTCTTCTGATGTGAAGGATGGAAGGGCTTATGCTTATCTACTTAATGTCCTCGCTCCTGAACACTGCAGTCCATCCACCTTGGATACTACAGATCCCATTGAAAGGGCAAAACTGGTAATTGATCATGCAGAGAGAATGGGCTGCAAAAGATACTTGACACCCAAGGACATTGTGGAGGGTTCCTCAAATTTGAATCTTGCATTTGTGGCCCAAATATTTCATCACAGGAGTGGCTTATCTACAGACAGTAACAAGATGTCCTATGCTGAGATGATGACAGATGATGTGCAAACATCTAGAGAAGAGAGATGCTTTCGGCTGTGGATCAATAGTCTTGGAATTGGGACATACGTAAATAATGTATTCGAGGATGTCAGAAATGGCTGGATACTTCTGGAAGTGCTAGACAGGATTTCTCCAGGATCAGTTAACTGGAAACAGGCAACAAAACCCCCAATTAAGATGCCATTTAGAAAAGTAGAGAACTGCAATCAGATCATAAGAATTGGGAAACAACTCAGGTTCTCGCTAGTCAATGTAGCTGGCAATGACATTGTGCAAGGGAACAAGAAGCTGATTCTTGCCTTCTTGTGGCAGTTGATGAGATCCAGTATGCTTCAACTGTTAAAAAATTTGAGATCTCATTCCCAAGGAAAGGAGGTCATTGATGCTGATATCCTGAAATGGGCAAACAGAAAAGTGCAGAGCACTGGGAGAACTTCCCACCTAGAGAGTTTCAAGGATAAGAGCTTGTCAAGTGGAATCTTCCTCCTTGAGCTTCTCAGTGCTGTAGAGCCCAGGGTTGTCAATTGGAATCTTGTCACCAAGGGTGAAAGTGATGATGAGAAGAAATTGAATGCTACCTACATAATCAGTGTTGCTCGAAAGCTTGGTTGTTCCATCTTTTTGTTACCTGAGGATATTATGGAGGTCAATCAGAAGATGATTCTCACTCTTGCAGCCAGTATAATGTATTATAGTCTGCAACAGTCAGCTGAAGATGGAGACTCATTTCCTTCACCGGCAGACACCACTACTAACACCACTACGCCTGATGCATCCCCTGCCCCGTCAGTTAGTGGCGAGGATGAAAACTCTTCCCTTGGCGGTGAATTCTCCAACCTAAGCATCGATGATGCCACCTCTGACACAACAGTTTCCTCTCAGCTTGAGTTTGAAGGAGTACTTGATGAGCCCTAG 2079 0.4262 MSIFVGVIVSDHWLQSQFTQVELRSLKSKFIALKNQNGKVTCGDLPPLMAKLNAFREMYTEKEIVGILGESGTDLTDEIDFEAFLRAYLNLQSRATAKQGVTKNSSSFLKATTTTLLHTISESEKASYVAHINSYLGDDPFLKQFLPLDPATNDLFDLAKDGVLLCKLINVAVPGTIDERTINTKRILNLWERNENHTLCLNSAKAIGCTVVNIGTQDLVEGRPHLVLGLISQIIKIQLLADLNLKKTPQLVELVEDSQEVEELLSLPPEKVLLKWMNFHLQRGGYEKTVKNFSSDVKDGRAYAYLLNVLAPEHCSPSTLDTTDPIERAKLVIDHAERMGCKRYLTPKDIVEGSSNLNLAFVAQIFHHRSGLSTDSNKMSYAEMMTDDVQTSREERCFRLWINSLGIGTYVNNVFEDVRNGWILLEVLDRISPGSVNWKQATKPPIKMPFRKVENCNQIIRIGKQLRFSLVNVAGNDIVQGNKKLILAFLWQLMRSSMLQLLKNLRSHSQGKEVIDADILKWANRKVQSTGRTSHLESFKDKSLSSGIFLLELLSAVEPRVVNWNLVTKGESDDEKKLNATYIISVARKLGCSIFLLPEDIMEVNQKMILTLAASIMYYSLQQSAEDGDSFPSPADTTTNTTTPDASPAPSVSGEDENSSLGGEFSNLSIDDATSDTTVSSQLEFEGVLDEP 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g1291 692 ProSiteProfiles Calponin homology (CH) domain profile. 122 239 IPR001715 GO:0005515
Dere05g1291 692 MobiDBLite consensus disorder prediction 627 692 - -
Dere05g1291 692 CDD CH_AtFIM_like_rpt2 259 367 - -
Dere05g1291 692 Gene3D - 118 244 IPR036872 -
Dere05g1291 692 FunFam Fimbrin-1 isoform A 506 618 - -
Dere05g1291 692 PANTHER FIMBRIN/PLASTIN 1 623 IPR039959 GO:0051015|GO:0051017
Dere05g1291 692 FunFam Fimbrin-2 like 118 244 - -
Dere05g1291 692 FunFam Fimbrin-2 isoform A 245 373 - -
Dere05g1291 692 CDD CH_AtFIM_like_rpt1 123 238 - -
Dere05g1291 692 CDD CH_AtFIM_like_rpt3 390 503 - -
Dere05g1291 692 ProSiteProfiles Calponin homology (CH) domain profile. 513 621 IPR001715 GO:0005515
Dere05g1291 692 Gene3D - 388 505 IPR036872 -
Dere05g1291 692 ProSiteProfiles Calponin homology (CH) domain profile. 267 370 IPR001715 GO:0005515
Dere05g1291 692 Pfam Calponin homology (CH) domain 517 619 IPR001715 GO:0005515
Dere05g1291 692 Pfam Calponin homology (CH) domain 130 237 IPR001715 GO:0005515
Dere05g1291 692 Pfam Calponin homology (CH) domain 394 495 IPR001715 GO:0005515
Dere05g1291 692 Pfam Calponin homology (CH) domain 268 369 IPR001715 GO:0005515
Dere05g1291 692 SUPERFAMILY Calponin-homology domain, CH-domain 120 618 IPR036872 -
Dere05g1291 692 ProSitePatterns Actinin-type actin-binding domain signature 2. 211 235 IPR001589 -
Dere05g1291 692 Gene3D - 245 373 IPR036872 -
Dere05g1291 692 SMART ch_5 269 368 IPR001715 GO:0005515
Dere05g1291 692 SMART ch_5 515 619 IPR001715 GO:0005515
Dere05g1291 692 SMART ch_5 124 237 IPR001715 GO:0005515
Dere05g1291 692 SMART ch_5 394 496 IPR001715 GO:0005515
Dere05g1291 692 SUPERFAMILY EF-hand 14 95 IPR011992 -
Dere05g1291 692 ProSiteProfiles Calponin homology (CH) domain profile. 392 498 IPR001715 GO:0005515
Dere05g1291 692 MobiDBLite consensus disorder prediction 627 684 - -
Dere05g1291 692 FunFam Fimbrin-2 like 388 505 - -
Dere05g1291 692 Gene3D - 506 618 IPR036872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g1291 Dere-ChrDere05 21054042 21059930 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g1291 1 681 EF-hand Containing Proteins AT5G55400 72.046 0.0 1021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g1291 05 21054042 21059930 Dere05g1291 05 21054042 21059930 ECH