Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g05066 ATGTCAAAATTTGAGGGTGTTATTGTATCTGATCAATCTCTTCAAAGCCAGTTTACACAAGTTGAACTTCGTAGTCTTAAATCAAAATTTGTGGCTTTTAAAAATCAGAATGGTAAAGTTACATTTGGAGATTTAGCATCTTTAATGATGAAGCTAAAGTCATTCGTAGATATGTATAGGGAAGATGAGATTAAGGGGATCTTGAATGAGACAGATAATGACTTTACCAATGATGTTGATTTTGAAGCCTTCTTAAGAACATATCTGAATTTGCGAAGCCAAGCTACAACGAAACAAGGTGGAGCGAAACACTCCTCATCATTCCTTAAGGAAACCATAACTACCCTTCTTCACACGATCAGCGGATCAGAAAAGGCATTTTATGTTGCTCACATAAACAGCTACCTCGGTGATGATCCATTTCTGAGTCAATATCTTCCGTTGGATCCAACTACGAATGATCTATTTAATCTTTCAAAAGATGGCATTCTTCTGTGTAAGCTTATCAACGTCGCCGTGCCTGGAACTATCGACGAGCGAGCCATCAATACAAAACGAAATCTTACTCTTTGGGAGAGAAATGAGAACCATACTTTATGCCTCAATTCGGCTAAGGCTATTGGCTGCACAGTGGTTAACATTGGCGCGCAGGACTTAATTGAAGGAAGACCTCATCTTGTTCTAGGATTGATTTCTCAAATCATAAAGATCCAATTGTTGGCTGATCTCAACCTTAAGAAGATGCCTCAGCTTGTGGAATTGGTTGATGATAGTCAGGATATTGAAGAGCTTCTCAATTTGTCTCCCGAAAAGGTTCTACTAAGATGGATGAATTTTCATCTCCAGAGAGGAGGTTACGAGAAAACCGTCAAGAATTTTTCTTCTGATTTGAAGGATGCAGAGGCTTATGCATATCTTCTTAATGTCCTTGCTCCGGAACATTGCGATCCAGCCACCTTGGATACTAAAGATTCCTATGAACGAGCAAATCTTGTGCTTGAACATGCAGAGAGAATGGGCTGCAAAAGATACTTGACCCCGAGAGACATTACCGAGGGTACCTCAAATCTTAATCTTGCATTTGTCGCACAACTATTTCATCACAGGAGTGGCCTATCGACAGATACTAAAAAGATGTCATACGCTGAGATGATGACAGAAGATGTGCAAACATGTAGAGAAGAGAGGTGTTTTAGGATGTGGATCAATAGTCTTGGAATTTCCACTCGTGTAAATAATCTTTTTGAGGATGTTAGAAACGGATGGATACTTCTAGAAGTTCTAGACAAGATTTTTCCAGGATCGGTTAACTGGAAACAGGCAACAAGACCTCCGATTAGAATGCCATTCAGAAAAGTAGAGAATTGCAACCAGGTCATAAAAATCGGAAAACAACTGAAATTCTCACTAGTCAATGTAGCTGGCAATGATATTGTGCAAGGAAATAAGAAGCTTATTGTTGCTTTATTGTGGCAGTTGATGAGATTCACAATGCTTCAACTGTTGAGAAATTTGAGATCTCATTCTCAAGGAAAGGAGATCAGTGATGCCGATATCTTGAAATGGGCGAACAGAAAAGTGAATAGCATTGGAAGAACTTCTCAAATTCAGAGTTTCAAGGATAAGAGCTTGTCAAGTGGACTCTTTTTCCTTGAGCTTCTCAGTGCAGTAGAGCCAAGGGTTGTCAATTGGAACCTAGTCACCAAGGGTGAAAGTGACGACGAGAAGAAGTTGAATGCCACGTACATAATCAGTGTCGCACGAAAGCTCGGTTGTTCCATATATTTGCTACCTGAGGATATTATGGAGGTTAATCAGAAGATGATTCTGACTTTAACAGCCAGTATAATGTATTGGAGTCTTCAACAACAACCAGAAGAAGCAGATTCATTTCCTTCACCTGCTAGCACAGTCACTACCGCAACACCCGAAGCTTCCCCTGTCCCTTCCGTTTGCGGCGAAGATGAAAGCTATTCATCCCTTAACGGCGACTTCGCCAACTTGAGTGTTGATGATACAACTTCCGATACAACAGTCTCTTCGCAACTCGAGATTGATAGCGTTGTTCTCGATGAGTTATTTTGA 2085 0.4029 MSKFEGVIVSDQSLQSQFTQVELRSLKSKFVAFKNQNGKVTFGDLASLMMKLKSFVDMYREDEIKGILNETDNDFTNDVDFEAFLRTYLNLRSQATTKQGGAKHSSSFLKETITTLLHTISGSEKAFYVAHINSYLGDDPFLSQYLPLDPTTNDLFNLSKDGILLCKLINVAVPGTIDERAINTKRNLTLWERNENHTLCLNSAKAIGCTVVNIGAQDLIEGRPHLVLGLISQIIKIQLLADLNLKKMPQLVELVDDSQDIEELLNLSPEKVLLRWMNFHLQRGGYEKTVKNFSSDLKDAEAYAYLLNVLAPEHCDPATLDTKDSYERANLVLEHAERMGCKRYLTPRDITEGTSNLNLAFVAQLFHHRSGLSTDTKKMSYAEMMTEDVQTCREERCFRMWINSLGISTRVNNLFEDVRNGWILLEVLDKIFPGSVNWKQATRPPIRMPFRKVENCNQVIKIGKQLKFSLVNVAGNDIVQGNKKLIVALLWQLMRFTMLQLLRNLRSHSQGKEISDADILKWANRKVNSIGRTSQIQSFKDKSLSSGLFFLELLSAVEPRVVNWNLVTKGESDDEKKLNATYIISVARKLGCSIYLLPEDIMEVNQKMILTLTASIMYWSLQQQPEEADSFPSPASTVTTATPEASPVPSVCGEDESYSSLNGDFANLSVDDTTSDTTVSSQLEIDSVVLDELF 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g05066 694 FunFam Fimbrin-2 isoform A 245 373 - -
Trre9g05066 694 ProSiteProfiles Calponin homology (CH) domain profile. 122 239 IPR001715 GO:0005515
Trre9g05066 694 ProSiteProfiles Calponin homology (CH) domain profile. 513 621 IPR001715 GO:0005515
Trre9g05066 694 CDD CH_AtFIM_like_rpt4 513 621 - -
Trre9g05066 694 Gene3D - 2 121 - -
Trre9g05066 694 CDD CH_AtFIM_like_rpt1 123 238 - -
Trre9g05066 694 Gene3D - 506 618 IPR036872 -
Trre9g05066 694 ProSiteProfiles Calponin homology (CH) domain profile. 267 370 IPR001715 GO:0005515
Trre9g05066 694 Gene3D - 245 373 IPR036872 -
Trre9g05066 694 SMART ch_5 515 619 IPR001715 GO:0005515
Trre9g05066 694 SMART ch_5 394 496 IPR001715 GO:0005515
Trre9g05066 694 SMART ch_5 269 368 IPR001715 GO:0005515
Trre9g05066 694 SMART ch_5 124 237 IPR001715 GO:0005515
Trre9g05066 694 SUPERFAMILY Calponin-homology domain, CH-domain 121 618 IPR036872 -
Trre9g05066 694 Gene3D - 122 244 IPR036872 -
Trre9g05066 694 MobiDBLite consensus disorder prediction 628 646 - -
Trre9g05066 694 FunFam Fimbrin-2 like 118 244 - -
Trre9g05066 694 Pfam Calponin homology (CH) domain 516 617 IPR001715 GO:0005515
Trre9g05066 694 Pfam Calponin homology (CH) domain 395 496 IPR001715 GO:0005515
Trre9g05066 694 Pfam Calponin homology (CH) domain 150 237 IPR001715 GO:0005515
Trre9g05066 694 Pfam Calponin homology (CH) domain 268 369 IPR001715 GO:0005515
Trre9g05066 694 SUPERFAMILY EF-hand 13 94 IPR011992 -
Trre9g05066 694 CDD CH_AtFIM_like_rpt2 259 367 - -
Trre9g05066 694 FunFam Fimbrin-2 like 388 505 - -
Trre9g05066 694 PANTHER FIMBRIN/PLASTIN 1 623 IPR039959 GO:0051015|GO:0051017
Trre9g05066 694 MobiDBLite consensus disorder prediction 628 657 - -
Trre9g05066 694 ProSitePatterns Actinin-type actin-binding domain signature 2. 211 235 IPR001589 -
Trre9g05066 694 Gene3D - 388 505 IPR036872 -
Trre9g05066 694 ProSiteProfiles Calponin homology (CH) domain profile. 392 498 IPR001715 GO:0005515
Trre9g05066 694 CDD CH_AtFIM_like_rpt3 390 503 - -
Trre9g05066 694 FunFam Fimbrin-1 isoform A 506 618 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g05066 Trre-Chr9 56319568 56323890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g05066 1 693 EF-hand Containing Proteins AT5G55400 69.731 0.0 1011
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g05066 K17275 - gmx:100810854 1175.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g05066 9 56319568 56323890 Trre9g05066 9 56319568 56323890 ECH