Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00369 ATGTCTAAATTCGAAGGTGTTATTGTCTCCGATCAATGGCTTCATAGCCAATTCACGCAGGTTGAGCTTCGCAGCCTGAAATCAAAATTTATGACTTTTAAGAATCAGAATGGTAAAGTTACATTCGGAGATTTGCCACCTTTGATGGTGAAGGTAAACGCATTCAGAGACATGTACAGTGAGGATGAGATTAGGGGGATCTTGGGGGAATCAGGCACTGATTTTACCAATGACATTGATTTTGAAATGTTCTTAAAGTCATATTTGAATTTGCAAAGCCAAGCTACTGCAAAACAGGGTGGTAGGAGGCACTCCTCGTCATTCCTCAAGGATACTGTGACCACCCTTCTTCACACAATCAGTGAATCAGAAAAGGCCTGTTACGTTGCCCACATAAACAGCTATCTTGGTGATGATCCATTTTTGAAGCAATATCTTCCATTGAACCCAGCTTCAAATGATATATTTGATCTTGCAAAAGATGGCGTTCTTCTGTGTAAGCTCATCAATGTTGCTGTTCCTGGTACAATAGATGAGCGAGCCATCAATTGCAAACGCAGTCCTAGTCTTTGGGAGGTCAACGAGAACCATACCCTATGCCTCAATTCCGCTAAGGCTATTGGCTGCACAGTGGTTAACATTGGTGCACAGGATTTGGTTGAAGGAAGACCTCATCTTGTTCTAGGGTTGATTTCCCAAATCATAAAGATTCAGCTGCTGGCTGATCTCAACCTTAAGAAGACACCTCAACTTGTGGAATTGGCTGATGACGGTGAGGATATCGAAGAGCTTCTTAATTTGTCTCCCGAAAAGGTTCTACTAAAATGGATGAATTTTCATCTCCAGAGAGCAGGATACGAGAAAACTGTCAGAAATTTTTCTTCTGATGTTAAGGATGGAGAGGCTTATGCTTATCTGCTTAATGTCCTCGCTCCTGAACATTGCAATCCAGCCACCTTAGATACCAAGGATGCCAATGAAAGGGCAAATATGGTCATTGATCATGCAGAGAAAATGGGCTGCAAAAGATACTTGGCCCCGAGGGATGTTGCTGAGGGTACTTCGAATTTGAATCTTGCATTTGTTGCACAACTGTTTCATCACAGGAGTGGTCTGTCTACAGACACTAAAAAGATTTCCTATGCTGAGATGATAACTGAGGATGTGCAAACATCTAGAGAAGAGAGATGCTTCCGATTGTGGATCAACAGTCTTGGAATTTCTACACATGTAAATAATCTATTTGAGGATGTCAGAAATGGATGGGTACTTTTAGAGGTGTTAGACAAGATTTTTCCAGGATCAATTAACTGGAAACAGGCGACAAAACCTCCAATCAGAATGCCCTTCAGAAAAGTAGAGAACTGCAATCAGGTCATAGAAGTTGGTACACAACTGAGATTCTCACTAGTCAATGTATCTGGAAATGACATTGTGCAAGGAAATAAGAAGCTTATTCTTGCTTTATTGTGGCAGCTGATGAGGTTTACTATGCTTCAACTGTTGAAAAATTTGAGATCTCATTCCCAAGGAAAGGAGATCAGGGATGCAGATATCCTGAAATGGGCAAACAGAAAAGTGAAGAGCACTGGCAGAACTTCTCAAATAGAGAGCTTCAAGGACAAGAGCTTATCAAGTGGACTCTTTTTCCTTGAGCTTCTGAGTGCTGTTGAGCCCAGACTAGTCAATTGGAACCTTGTCACCAAGGGTGAAAGTGATGATGAGAAGAGGTTGAATGCCACCTACACAATCAGTGTTGCACGAAAGCTTGGTTGCTCTATTTTTTTGTTACCTGAGGATATTATGGAGGTTAACCAGAAGATGATACTCACTCTTATAGCTAGCATAATGTATTGGAGCCTTCAACAACAGACTGAAGATCTAAATTCATTTCCTTCACCTGCTAACACTGCAACTACCACCACACCTGAAGCATCTCCAGCGCCTTCGGTTTGCGGCGAAGATGAAAATTTCTCCATCGGCGGCGAGTTCTCCAACTTGAGCATCGATGATACCACCTCTGACAGCACGGCCTCTTCACAACCGGAGTCTGATGGCGTTGCTGCAGCAGATGAGCTGTTATGA 2085 0.4235 MSKFEGVIVSDQWLHSQFTQVELRSLKSKFMTFKNQNGKVTFGDLPPLMVKVNAFRDMYSEDEIRGILGESGTDFTNDIDFEMFLKSYLNLQSQATAKQGGRRHSSSFLKDTVTTLLHTISESEKACYVAHINSYLGDDPFLKQYLPLNPASNDIFDLAKDGVLLCKLINVAVPGTIDERAINCKRSPSLWEVNENHTLCLNSAKAIGCTVVNIGAQDLVEGRPHLVLGLISQIIKIQLLADLNLKKTPQLVELADDGEDIEELLNLSPEKVLLKWMNFHLQRAGYEKTVRNFSSDVKDGEAYAYLLNVLAPEHCNPATLDTKDANERANMVIDHAEKMGCKRYLAPRDVAEGTSNLNLAFVAQLFHHRSGLSTDTKKISYAEMITEDVQTSREERCFRLWINSLGISTHVNNLFEDVRNGWVLLEVLDKIFPGSINWKQATKPPIRMPFRKVENCNQVIEVGTQLRFSLVNVSGNDIVQGNKKLILALLWQLMRFTMLQLLKNLRSHSQGKEIRDADILKWANRKVKSTGRTSQIESFKDKSLSSGLFFLELLSAVEPRLVNWNLVTKGESDDEKRLNATYTISVARKLGCSIFLLPEDIMEVNQKMILTLIASIMYWSLQQQTEDLNSFPSPANTATTTTPEASPAPSVCGEDENFSIGGEFSNLSIDDTTSDSTASSQPESDGVAAADELL 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00369 694 MobiDBLite consensus disorder prediction 630 694 - -
Vimu1g00369 694 FunFam Fimbrin-2 isoform A 245 373 - -
Vimu1g00369 694 Pfam Calponin homology (CH) domain 394 496 IPR001715 GO:0005515
Vimu1g00369 694 Pfam Calponin homology (CH) domain 153 237 IPR001715 GO:0005515
Vimu1g00369 694 Pfam Calponin homology (CH) domain 515 617 IPR001715 GO:0005515
Vimu1g00369 694 Pfam Calponin homology (CH) domain 268 369 IPR001715 GO:0005515
Vimu1g00369 694 ProSiteProfiles Calponin homology (CH) domain profile. 392 498 IPR001715 GO:0005515
Vimu1g00369 694 ProSitePatterns Actinin-type actin-binding domain signature 2. 470 494 IPR001589 -
Vimu1g00369 694 SMART ch_5 124 237 IPR001715 GO:0005515
Vimu1g00369 694 SMART ch_5 515 619 IPR001715 GO:0005515
Vimu1g00369 694 SMART ch_5 269 368 IPR001715 GO:0005515
Vimu1g00369 694 SMART ch_5 394 496 IPR001715 GO:0005515
Vimu1g00369 694 Gene3D - 506 618 IPR036872 -
Vimu1g00369 694 SUPERFAMILY EF-hand 12 94 IPR011992 -
Vimu1g00369 694 ProSiteProfiles Calponin homology (CH) domain profile. 513 621 IPR001715 GO:0005515
Vimu1g00369 694 FunFam Fimbrin-1 isoform A 506 618 - -
Vimu1g00369 694 ProSitePatterns Actinin-type actin-binding domain signature 2. 211 235 IPR001589 -
Vimu1g00369 694 CDD CH_AtFIM_like_rpt3 390 503 - -
Vimu1g00369 694 FunFam Fimbrin-2 like 388 505 - -
Vimu1g00369 694 MobiDBLite consensus disorder prediction 661 684 - -
Vimu1g00369 694 SUPERFAMILY Calponin-homology domain, CH-domain 120 618 IPR036872 -
Vimu1g00369 694 ProSiteProfiles Calponin homology (CH) domain profile. 122 239 IPR001715 GO:0005515
Vimu1g00369 694 Gene3D - 118 244 IPR036872 -
Vimu1g00369 694 Gene3D - 388 505 IPR036872 -
Vimu1g00369 694 FunFam Fimbrin-2 like 118 244 - -
Vimu1g00369 694 Gene3D - 245 373 IPR036872 -
Vimu1g00369 694 ProSiteProfiles Calponin homology (CH) domain profile. 267 370 IPR001715 GO:0005515
Vimu1g00369 694 MobiDBLite consensus disorder prediction 630 647 - -
Vimu1g00369 694 PANTHER FIMBRIN/PLASTIN 1 624 IPR039959 GO:0051015|GO:0051017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00369 Vimu-Chr1 2182457 2186991 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00369 1 691 EF-hand Containing Proteins AT5G55400 68.227 0.0 987
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00369 K17275 - gmx:100794850 1269.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00369 1 2182457 2186991 Vimu1g00369 1 2182457 2186991 ECH