Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02911 ATGTCGAAATTCGAAGGTGTTGTTGTCTCCGATCAATCGCTTCATAGCCAATTCACGCAGGTTGAGCTTCGCAGCCTGAAATCAAAATTTGTCACTTTAAAGGATCAGAATGGTAAAGTTACATTTGAAGATTTGCCACCTCTGATGGTGAAGCTAAACGCATTCAGAGACATGTACAGTGAGGATGAGATTAGGAGGATCTTGGGGGAATCAGACACTGATTTTACCAATGATATTGATTTTGAAATCTTCTTAAAGGCATATTTGAATTTGCAAAGCCAAGCTCCTGCAAAACAAGGTGGTAGGAGGCATTCCTCGTCATTCCTCAAGGATACTGTGACCACCCTTCTTCACACAATCAGTGAATCAGAAAAGGCCTGTTACGTTGCCCACATAAACAGCTATCTTGGTGATGATCCATTTTTGAAGCAATATCTTCCATTGAACCCAGCTTCAAATGATATCTTTAATCTTGCAAAGGATGGCGTTCTTCTGTGTAAACTCATCAATGTTGCTGTTCCTGGGACTATAGATGAGCGAGCCATCAATTGCAAACGCAATCCCAGTCTTTGGGAGGTCAACGAGAACCATACTCTATGCCTCAATTCCGCTAAGGCTATTGGCTGCACAGTGGTTAACATTGGTGCACAGGATTTGGTTGAAGGAAGACCTCATCTTGTTCTGGGGTTGATTTCCCAAATCATAAAGATTCAGCTACTGGCTGATCTCAACCTTAAGAAGACACCACAACTTGTGGAATTGGCTGATGACGGTGAGGATATCGAAGAGCTTCTTAATTTGTCTCCCGAAAAGGTTCTACTAAAATGGATGAATTTTCATCTCCAAAGAGCAGGATACGAGAAAACTGTCAAAAATTTTTCTTCTGATCTTAAGGATGGAGAGGCTTATGCTTATCTGCTTAATGTCCTTGCTCCTGAACATTGCAATCCAGCCACCTTAGATACCAAGGATGCCAATGAAAGGGCAAATATGGTAATTGATCATGCAGAGAAAATGGGCTGTAAAAGATACTTGAGCCCGAGGGATGTTTCCGAGGGTACTTCCAATTTGAATCTTGCTTTTGTTGCACAACTGTTTCACCACAGGAGTGGTCTATCTACAGACACTAGAAAGATTTCCTATGCTGAGATGATAACAGATGATGTGCAAACATCTAGAGAAGAGAGATGCTTCCGACTTTGGATCAATAGTCTTGGAATTTCTACACATGTAAATAATCTATTTGAGGATGTCAGAAATGGATGGGCACTTTTAGAGGTATTAGACAAGATTTTTCCAGGGTCAATTAACTGGAAACAGGCGACAAGACCTCCAATTAGAATGCCATTCAGAAAAGTAGAGAATTGCAACCAGGTTATAGAAGTTGGTACACAACTGAGATTCTCACTAGTCAATGTATCTGGCAATGACATTGTGCAAGGAAATAAAAAGCTCATTCTTGCTTTATTGTGGCAACTGATGAGGTTCACTATGCTTCAACTGTTGAGAAATTTGAGATCTCATTCCCAAGGAAAGGAGATCAGGGATGCAGATATCCTGAAATGGGCAAACAGAAAAGTGAGGAGCACTGGCAGAACTTCTCACATAGAGAGCTTCAAGGACAAAAGCTTGTCAAGTGGACTCTTTTTCCTTGAGCTTCTGAGTGCTGTTGAGCCCAGACTTGTCAATTGGAACCTTGTCACCAAGGGTGAAAGTGATGATGAGAAGAGGTTGAATGCCACCTACACAATCAGTGTTGCACGAAAGCTTGGTTGCTCCATTTTTTTGCTACCGGAGGATATTGTGGAGGTTAACCAGAAGATGATACTCACTCTTATAGCTAGTATAATGTACTGGAGCCTGCAACAACAGACTGAAGATCAAAATTCATTTCCTTCACCTGAAGCATCTCCAGCACCTTCGGTTTGCGGCGAAGATGAAAATTTCTCCATCGGCGGTGAGTTCTCCAACTTGAGTGTTGATGACACCACTTCTGACAGCACCGCCTCTTCACAGCCGGAGTCTGATGGCGTTGCTGCAGCAGATGAACTGTTATAA 2058 0.4208 MSKFEGVVVSDQSLHSQFTQVELRSLKSKFVTLKDQNGKVTFEDLPPLMVKLNAFRDMYSEDEIRRILGESDTDFTNDIDFEIFLKAYLNLQSQAPAKQGGRRHSSSFLKDTVTTLLHTISESEKACYVAHINSYLGDDPFLKQYLPLNPASNDIFNLAKDGVLLCKLINVAVPGTIDERAINCKRNPSLWEVNENHTLCLNSAKAIGCTVVNIGAQDLVEGRPHLVLGLISQIIKIQLLADLNLKKTPQLVELADDGEDIEELLNLSPEKVLLKWMNFHLQRAGYEKTVKNFSSDLKDGEAYAYLLNVLAPEHCNPATLDTKDANERANMVIDHAEKMGCKRYLSPRDVSEGTSNLNLAFVAQLFHHRSGLSTDTRKISYAEMITDDVQTSREERCFRLWINSLGISTHVNNLFEDVRNGWALLEVLDKIFPGSINWKQATRPPIRMPFRKVENCNQVIEVGTQLRFSLVNVSGNDIVQGNKKLILALLWQLMRFTMLQLLRNLRSHSQGKEIRDADILKWANRKVRSTGRTSHIESFKDKSLSSGLFFLELLSAVEPRLVNWNLVTKGESDDEKRLNATYTISVARKLGCSIFLLPEDIVEVNQKMILTLIASIMYWSLQQQTEDQNSFPSPEASPAPSVCGEDENFSIGGEFSNLSVDDTTSDSTASSQPESDGVAAADELL 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02911 685 ProSiteProfiles Calponin homology (CH) domain profile. 122 239 IPR001715 GO:0005515
Viun8g02911 685 FunFam Fimbrin-2 like 388 505 - -
Viun8g02911 685 ProSitePatterns Actinin-type actin-binding domain signature 2. 211 235 IPR001589 -
Viun8g02911 685 Gene3D - 506 618 IPR036872 -
Viun8g02911 685 Pfam Calponin homology (CH) domain 515 617 IPR001715 GO:0005515
Viun8g02911 685 Pfam Calponin homology (CH) domain 153 237 IPR001715 GO:0005515
Viun8g02911 685 Pfam Calponin homology (CH) domain 268 369 IPR001715 GO:0005515
Viun8g02911 685 Pfam Calponin homology (CH) domain 394 496 IPR001715 GO:0005515
Viun8g02911 685 Gene3D - 388 505 IPR036872 -
Viun8g02911 685 ProSiteProfiles Calponin homology (CH) domain profile. 392 498 IPR001715 GO:0005515
Viun8g02911 685 Gene3D - 245 373 IPR036872 -
Viun8g02911 685 Gene3D - 2 116 - -
Viun8g02911 685 MobiDBLite consensus disorder prediction 627 685 - -
Viun8g02911 685 ProSiteProfiles Calponin homology (CH) domain profile. 267 370 IPR001715 GO:0005515
Viun8g02911 685 FunFam Fimbrin-2 like 118 244 - -
Viun8g02911 685 CDD CH_AtFIM_like_rpt3 390 503 - -
Viun8g02911 685 ProSitePatterns Actinin-type actin-binding domain signature 2. 470 494 IPR001589 -
Viun8g02911 685 SUPERFAMILY EF-hand 13 95 IPR011992 -
Viun8g02911 685 FunFam Fimbrin-2 isoform A 245 373 - -
Viun8g02911 685 FunFam Fimbrin-1 isoform A 506 618 - -
Viun8g02911 685 PANTHER FIMBRIN/PLASTIN 1 624 IPR039959 GO:0051015|GO:0051017
Viun8g02911 685 Gene3D - 117 243 IPR036872 -
Viun8g02911 685 SMART ch_5 394 496 IPR001715 GO:0005515
Viun8g02911 685 SMART ch_5 515 619 IPR001715 GO:0005515
Viun8g02911 685 SMART ch_5 269 368 IPR001715 GO:0005515
Viun8g02911 685 SMART ch_5 124 237 IPR001715 GO:0005515
Viun8g02911 685 SUPERFAMILY Calponin-homology domain, CH-domain 120 618 IPR036872 -
Viun8g02911 685 MobiDBLite consensus disorder prediction 652 675 - -
Viun8g02911 685 ProSiteProfiles Calponin homology (CH) domain profile. 513 621 IPR001715 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02911 Viun-Chr8 36875389 36881361 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02911 1 682 EF-hand Containing Proteins AT5G55400 67.660 0.0 975
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02911 K17275 - gmx:100810854 1230.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g02911 8 36875389 36881361 Viun8g02911 8 36875389 36881361 ECH