Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3529 ATGTCAAAATTTGAGGGTGTTCTTGTCTCCGATCAATGGCTTCAAAGCCAGTTCACGCAGGTTGAGCTTCGCAGCCTGAAATCAAAATTTGTCTCTTTAAAGAATCAGAATGGTAAAGTTACATTTGGAGATTTGCCGCATTTAATGGTGAAGCTAAACGCATTCAGAGACATGTATGGTGAGGATGAGATTAGGGGGATCTTGGGTGAGTCAGGCACTGATTTTACCAATGACATTGATTTTGAAGCCTTCTTAAAGGCATATTTGAATTTGCAAAGCCAAGCTACAGCGAAACAAGGTGGTGGTAGGAGGCACTCTTCTTCATTCCTCAAGGAAACTGTAACCACCCTTCTTCACACGATCAGTGAATCAGAAAAGGCCTGCTATGTTGCCCACATAAACAGCTACCTTGGTGATGATCCATTTTTGAACCAATATCTTCCGTTGGACCCAGCTACAAATGATATATTTGATCTTGCAAAAGATGGCGTTCTTCTGTGTAAGCTTATCAATGTTGCTGTGCCTGGGACTATAGATGAGCGAGCCATCAATTGCAAACAGAATCCTAGTCTTTGGGAGATAAACGAGAACCATACTCTTTGCCTCAATTCCGCCAAGGCTATTGGCTGCACAGTGGTTAACATTGGCACACAGGACTTAGTTGAAGGAAGGCCTCATCTTGTTCTAGGGTTGATTTCCCAAATCATAAAGATTCAACTGCTGGCAGATCTCAACCTTAAGAAAACACCTCAGCTTGTGGAATTGGTTGATGACAGCCAGGAGATTGAAGAGCTTCTTAATTTGTCTCCTGAAAAGGTTCTGCTAAAATGGATGAATTTTCATCTCCAGAGAGCAGGTTACAAGAAAACTGTCAAGAATTTTTCTTCTGATGTTAAGGATGGAGAGGCTTATGCTTATCTGCTTAATGTCCTTGCTCCTGAACATTGCAGTCCGGCCACCTTGGATACCAAGGATGCCAATGAAAGGGCAAATCTGGTTCTTGATCATGCAGAGAGAATGGGCTGCAAAAGATACTTGACCTCGAGGGACATTGTGGAGGGTACTTCAAATTTGAATCTTGCATTTGTTGCACAATTGTTTCATCACAGGAGTGGTCTATCTACAGACACTAAGAAGATGTCCTATGCTGAGATGATGACAGATGATGTGCAAACATCTAGAGAGGAGAGATGCTTCCGACTGTGGATCAATAGTCTTGGAATTTCTACATATGTAAATAACCTATTTGAGGATGTCAGAAATGGATGGATACTTTTAGAAGTGTTAGACAGGATATTTCCAGGATCAGTTAACTGGAAACAGGCAACAAGACCTCCAATTAGAATGCCATTCAGAAAAGTAGAGAACTGCAATCAGGTCATAAAAATTGGTAAACAACTGAGATTCTCACTTGTCAATGTAGCTGGCAATGACATTGTCCAAGGAAATAAGAAGCTCATTCTTGcTTTATTGTGGCAGCTGATGAGATTCACAATGCTtcaattgttgaaaaatttgaGATCTCATTCTCAAGGAAAGGAAATCAGTGATGCTGATATCCTGAAATGGGCAAACAGAAAAGTGAAGAGCACTGGCAGAACTTCTCACATAGAGAGCTTCAAGGATAAGAGCTTGTCAAGTGGACTCTTTTTCCTTGAGCTTCTGAGTGCTGTTGAGCCTAGGGTTGTCAATTGGAACCTTGTCACCAAGGGTGAAAGTGATGATGAGAAGAAGTTGAATGCCACCTATATAATCAGCGTTGCACGAAAGCTTGGTTGTTCAGTCTTTTTGTTACCTGAGGATATTATGGAGGTTAATCAGAAGATGATTCTCACTCTTGCAGCCAGTATAATGTATTGGAGCCTGCAACAACAGACTGAAGACACAGATTCATTTCCTTCACCTGCTGGCACTGCTACTACGACCACGCCCGAAGCCTCCCCAGCACCTTCGGTTTGTGGCGAAGATGAAAGCTCTTCCATCGGTGGCGAATTCTCCAACTTGAGTGTTGATGATGCCACCTCTGACACCACAGCCACTTCTTCACAACCCGAGTCTGATGGCGTTTCTGCGGGAGATGAGCTGTTATGA 2091 0.4228 MSKFEGVLVSDQWLQSQFTQVELRSLKSKFVSLKNQNGKVTFGDLPHLMVKLNAFRDMYGEDEIRGILGESGTDFTNDIDFEAFLKAYLNLQSQATAKQGGGRRHSSSFLKETVTTLLHTISESEKACYVAHINSYLGDDPFLNQYLPLDPATNDIFDLAKDGVLLCKLINVAVPGTIDERAINCKQNPSLWEINENHTLCLNSAKAIGCTVVNIGTQDLVEGRPHLVLGLISQIIKIQLLADLNLKKTPQLVELVDDSQEIEELLNLSPEKVLLKWMNFHLQRAGYKKTVKNFSSDVKDGEAYAYLLNVLAPEHCSPATLDTKDANERANLVLDHAERMGCKRYLTSRDIVEGTSNLNLAFVAQLFHHRSGLSTDTKKMSYAEMMTDDVQTSREERCFRLWINSLGISTYVNNLFEDVRNGWILLEVLDRIFPGSVNWKQATRPPIRMPFRKVENCNQVIKIGKQLRFSLVNVAGNDIVQGNKKLILALLWQLMRFTMLQLLKNLRSHSQGKEISDADILKWANRKVKSTGRTSHIESFKDKSLSSGLFFLELLSAVEPRVVNWNLVTKGESDDEKKLNATYIISVARKLGCSVFLLPEDIMEVNQKMILTLAASIMYWSLQQQTEDTDSFPSPAGTATTTTPEASPAPSVCGEDESSSIGGEFSNLSVDDATSDTTATSSQPESDGVSAGDELL 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3529 696 SUPERFAMILY Calponin-homology domain, CH-domain 121 619 IPR036872 -
Ssu6g3529 696 ProSiteProfiles Calponin homology (CH) domain profile. 123 240 IPR001715 GO:0005515
Ssu6g3529 696 PANTHER FIMBRIN-1 3 687 - -
Ssu6g3529 696 MobiDBLite consensus disorder prediction 628 696 - -
Ssu6g3529 696 Gene3D - 114 244 IPR036872 -
Ssu6g3529 696 ProSiteProfiles Calponin homology (CH) domain profile. 268 371 IPR001715 GO:0005515
Ssu6g3529 696 Gene3D - 389 506 IPR036872 -
Ssu6g3529 696 MobiDBLite consensus disorder prediction 660 688 - -
Ssu6g3529 696 Gene3D - 246 374 IPR036872 -
Ssu6g3529 696 PANTHER FIMBRIN/PLASTIN 3 687 IPR039959 GO:0051015|GO:0051017
Ssu6g3529 696 ProSiteProfiles Calponin homology (CH) domain profile. 514 622 IPR001715 GO:0005515
Ssu6g3529 696 SMART ch_5 270 369 IPR001715 GO:0005515
Ssu6g3529 696 SMART ch_5 395 497 IPR001715 GO:0005515
Ssu6g3529 696 SMART ch_5 516 620 IPR001715 GO:0005515
Ssu6g3529 696 SMART ch_5 125 238 IPR001715 GO:0005515
Ssu6g3529 696 ProSiteProfiles Calponin homology (CH) domain profile. 393 499 IPR001715 GO:0005515
Ssu6g3529 696 CDD CH 394 496 IPR001715 GO:0005515
Ssu6g3529 696 MobiDBLite consensus disorder prediction 628 648 - -
Ssu6g3529 696 Pfam Calponin homology (CH) domain 395 497 IPR001715 GO:0005515
Ssu6g3529 696 Pfam Calponin homology (CH) domain 517 618 IPR001715 GO:0005515
Ssu6g3529 696 Pfam Calponin homology (CH) domain 269 370 IPR001715 GO:0005515
Ssu6g3529 696 Pfam Calponin homology (CH) domain 152 238 IPR001715 GO:0005515
Ssu6g3529 696 CDD CH 515 622 IPR001715 GO:0005515
Ssu6g3529 696 CDD CH 269 369 IPR001715 GO:0005515
Ssu6g3529 696 ProSitePatterns Actinin-type actin-binding domain signature 2. 471 495 IPR001589 -
Ssu6g3529 696 CDD CH 123 238 IPR001715 GO:0005515
Ssu6g3529 696 ProSitePatterns Actinin-type actin-binding domain signature 2. 212 236 IPR001589 -
Ssu6g3529 696 Gene3D - 507 619 IPR036872 -
Ssu6g3529 696 SUPERFAMILY EF-hand 13 95 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3529 Ssu-Chr6 78463364 78469215 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3529 1 680 EF-hand Containing Proteins AT5G55400 70.707 0.0 1011
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3529 - K17275 gmx:100794850 1305.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3529 6 78463364 78469215 Ssu6g3529 6 78463364 78469215 ECH