Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0179 ATGTCTAAATTCGAAGGTGTTATTGTCTCCGATCAATGGCTTCATAGCCAATTTACGCAGGTTGAGCTTCGCAGCCTGAAATCAAAATTTATGACTCTTAAGAATCAGAATGGTAAAGTTACATTCGGAGATTTGCCACCTTTGATGGTGAAGGTAAACGCATTCAGAGACATGTACAGTGAGGATGAGATTAGGGGGATCTTGGGGGAATCAGGCACTGATTTTACCAATGACATTGATTTTGAAATGTTCTTAAAGTCATATTTGAATTTGCAAAGCCAAGCTACTGCAAAACAGGGTGGTAGGAGGCACTCCTCGTCATTCCTCAAGGATACTGTGACCACCCTTCTTCACACAATCAGTGAATCAGAAAAGGCCTGTTACGTTGCCCACATAAACAGCTATCTTGGTGATGATCCATTTTTGAAGCAATATCTTCCATTGAACCCAGCTTCAAATGATATATTTGATCTTGCAAAAGATGGCGTTCTTCTGTGTAAGCTCATCAATGTTGCTGTTCCTGGTACAATAGATGAGCGAGCCATCAATTGCAAACGCAATCCTAGTCTTTGGGAGGTCAACGAGAACCATACCCTATGCCTCAATTCCGCTAAGGCTATTGGCTGCACAGTGGTTAACATTGGTGCACAGGATTTGGTTGAAGGAAGACCTCATCTTGTTCTAGGGTTGATTTCCCAAATCATAAAGATTCAGCTGCTGGCTGATCTCAACCTTAAGAAGACACCTCAACTTGTGGAATTGGCTGATGACGGTGAGGATATCGAAGAGCTTCTTAATTTGTCTCCCGAAAAGGTTCTACTAAAATGGATGAATTTTCATCTCCAGAGAGCAGGATACGAGAAAACTGTCAGAAATTTTTCTTCTGATGTTAAGGATGGAGAGGCTTATGCTTATCTGCTTAATGTCCTCGCTCCTGAACATTGCAATCCAGCCACCTTGGATACCAAGGATGCCAATGAAAGGGCAAATATGGTCATTGATCATGCAGAGAAAATGGGCTGCAAAAGATACTTGGCCCCGAGGGATGTTGCTGAGGGTACTTCGAATTTGAATCTTGCATTTGTTGCACAACTGTTTCATCACAGGAGTGGTCTGTCTACAGACACTAAAAAGATTTCCTATGCTGAGATGATAACTGAGGATGTGCAAACATCTAGAGAAGAGAGATGCTTCCGATTGTGGATCAACAGTCTTGGAATTTCTACACATGTAAATAATCTATTTGAGGATGTCAGAAATGGGTGGGTACTTTTAGAGGTGTTAGACAAGATTTTTCCTGGATCAATTAACTGGAAACAGGCGACAAAACCTCCAATCAGAATGCCCTTCAGAAAAGTAGAGAACTGCAATCAGGTCATAGAAGTTGGTACACAACTGAGATTCTCACTAGTCAATGTATCTGGAAATGACATTGTGCAAGGAAATAAAAAGCTTATTCTTGCTTTGTTGTGGCAGCTGATGAGGTTTACTATGCTTCAACTGTTGAAAAATTTGAGATCTCATTCCCAAGGAAAGGAGATCAGGGATGCAGATATCCTGAAATGGGCAAACAGAAAAGTGAAGAGCAGTGGCAGAACTTCTCAAATAGAGAGCTTCAAGGACAAGAGCTTGTCAAGTGGTCTCTTTTTCCTTGAGCTTCTGAGTGCTGTTGAGCCCAGACTTGTCAATTGGAACCTTGTCACCAAGGGTGAAAGTGAGGATGAGAAGAGGTTGAATGCCACCTACACAATCAGTGTTGCAAGAAAGCTTGGTTGTTCCATTTTTTTGTTACCTGAGGATATTATGGAGGTTAACCAGAAGATGATACTCACTCTTATAGCTAGCATAATGTATTGGAGCCTTCAACAACAGACTGAAGATCTAAATTCATTTCCTTCACCTGCAAACACTGCAACTACCACCACACCTGAAGCATCTCCAGCACCTTCGGTTTGCGGAGAAGATGAAAATTTCTCCATCGGCGGCGAGTTCTCCAACTTGAGCATCGATGATAACACCTCTGACAGCACAGCCTCTTCACAACCGGAGTCTGATGGCGTTGCTGCAGCAGATGAGCTGTTATGA 2085 0.4225 MSKFEGVIVSDQWLHSQFTQVELRSLKSKFMTLKNQNGKVTFGDLPPLMVKVNAFRDMYSEDEIRGILGESGTDFTNDIDFEMFLKSYLNLQSQATAKQGGRRHSSSFLKDTVTTLLHTISESEKACYVAHINSYLGDDPFLKQYLPLNPASNDIFDLAKDGVLLCKLINVAVPGTIDERAINCKRNPSLWEVNENHTLCLNSAKAIGCTVVNIGAQDLVEGRPHLVLGLISQIIKIQLLADLNLKKTPQLVELADDGEDIEELLNLSPEKVLLKWMNFHLQRAGYEKTVRNFSSDVKDGEAYAYLLNVLAPEHCNPATLDTKDANERANMVIDHAEKMGCKRYLAPRDVAEGTSNLNLAFVAQLFHHRSGLSTDTKKISYAEMITEDVQTSREERCFRLWINSLGISTHVNNLFEDVRNGWVLLEVLDKIFPGSINWKQATKPPIRMPFRKVENCNQVIEVGTQLRFSLVNVSGNDIVQGNKKLILALLWQLMRFTMLQLLKNLRSHSQGKEIRDADILKWANRKVKSSGRTSQIESFKDKSLSSGLFFLELLSAVEPRLVNWNLVTKGESEDEKRLNATYTISVARKLGCSIFLLPEDIMEVNQKMILTLIASIMYWSLQQQTEDLNSFPSPANTATTTTPEASPAPSVCGEDENFSIGGEFSNLSIDDNTSDSTASSQPESDGVAAADELL* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0179 694 Pfam Calponin homology (CH) domain 153 237 IPR001715 GO:0005515
Vra6g0179 694 Pfam Calponin homology (CH) domain 515 617 IPR001715 GO:0005515
Vra6g0179 694 Pfam Calponin homology (CH) domain 268 369 IPR001715 GO:0005515
Vra6g0179 694 Pfam Calponin homology (CH) domain 394 496 IPR001715 GO:0005515
Vra6g0179 694 ProSiteProfiles Calponin homology (CH) domain profile. 267 370 IPR001715 GO:0005515
Vra6g0179 694 ProSiteProfiles Calponin homology (CH) domain profile. 392 498 IPR001715 GO:0005515
Vra6g0179 694 PANTHER FIMBRIN-1 3 682 - -
Vra6g0179 694 MobiDBLite consensus disorder prediction 630 694 - -
Vra6g0179 694 Gene3D - 245 373 IPR036872 -
Vra6g0179 694 Gene3D - 506 618 IPR036872 -
Vra6g0179 694 SUPERFAMILY Calponin-homology domain, CH-domain 120 618 IPR036872 -
Vra6g0179 694 PANTHER FIMBRIN/PLASTIN 3 682 IPR039959 GO:0051015|GO:0051017
Vra6g0179 694 ProSiteProfiles Calponin homology (CH) domain profile. 122 239 IPR001715 GO:0005515
Vra6g0179 694 MobiDBLite consensus disorder prediction 630 647 - -
Vra6g0179 694 ProSitePatterns Actinin-type actin-binding domain signature 2. 211 235 IPR001589 -
Vra6g0179 694 Gene3D - 388 505 IPR036872 -
Vra6g0179 694 Gene3D - 113 243 IPR036872 -
Vra6g0179 694 CDD CH 514 621 IPR001715 GO:0005515
Vra6g0179 694 CDD CH 268 368 IPR001715 GO:0005515
Vra6g0179 694 SUPERFAMILY EF-hand 12 94 IPR011992 -
Vra6g0179 694 ProSitePatterns Actinin-type actin-binding domain signature 2. 470 494 IPR001589 -
Vra6g0179 694 ProSiteProfiles Calponin homology (CH) domain profile. 513 621 IPR001715 GO:0005515
Vra6g0179 694 SMART ch_5 124 237 IPR001715 GO:0005515
Vra6g0179 694 SMART ch_5 515 619 IPR001715 GO:0005515
Vra6g0179 694 SMART ch_5 269 368 IPR001715 GO:0005515
Vra6g0179 694 SMART ch_5 394 496 IPR001715 GO:0005515
Vra6g0179 694 CDD CH 142 237 IPR001715 GO:0005515
Vra6g0179 694 CDD CH 393 495 IPR001715 GO:0005515
Vra6g0179 694 MobiDBLite consensus disorder prediction 661 684 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0179 Vra-Chr6 1322218 1327834 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0179 1 691 EF-hand Containing Proteins AT5G55400 68.227 0.0 986
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0179 K17275 - gmx:100810854 1275.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0179 6 1322218 1327834 Vra6g0179 6 1322218 1327834 ECH