LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst8g00934	ATGAAGAGGGGTAGGTCATATTCAGATAATGAGTCTGAGGCTGAGTCTGAGACTGAGGTTCAGTCAGTCTCTGTGTCCAATTACCATCTTGTAGACGATGAAGACAATCCTGTGACTTTTGCTGTGTTGCCAATTCAATGGAGTGATTCTGAGAACTCTGGTGCCTGCAAAGAGAAGGTGTTCCTAGACGGGGACGCTGATAGCCGGCTGCGGAAGATTTTCATGCAAGTGACGGCGTGGAGATTTGACCTTTCCAGTGAGAGACCCGAGGTATTCTTGCTGGCAAAGGATGGAAGGTGGATCAAGCTTCAGAAGCCTAGGAAGGGTTTTCGGGAAACAATAAGGTCCGTTTTCGTCACCCTTTACTTCCTCCATGGTGTGAAGGGAAAACGTCAAATGTCTGTAGGATCTCTTTTGCAAGACTTGAGTCAGGATAAGGAGTTGAGCTTTTACGGGTTTAAGCCTTCAAAAAATGATTTATCGGACCACGTGCTTTTGATTGGTGAAGCTTCCAAAAGGGATGCTGACTTAGCTAAGTCCAAGCAGCTTTTGCTCATGGTTTTGGAGAAACTGAACAGTCAGAAACTTCTTGATGAGGAAGTTAATGATTTTGAACAGCCTGGACTTCCAGTTGTTGGCTATGACAGTGATATGATAGGCAAAGCTAATGAAGAATCCGAAGAAATGGATGCTTTGGATGTTTGTGCACTTTGTGACAATGGTGGTAATGTTACATGTTGCGATGGCATGTGTATGAGATCATTTCATGCTACTGAGGAGGCTGGTTTTGAAAATAGCTGTGTTTCTCTTGGTTTTACCCAGAAGGAAGTTGATGAGATCCCGAACTTTTATTGTAAGAATTGTGAATATCGTCAGCACCAGTGCTTTGCTTGTGGCAAGCTGGGGTCTTCTGATGAAGTTAACGGTGCTGAGGTTATTAAATGTGCTTCTGTGACCTGTGACCGTTTTTATCATCCACATTGTGTTGCAAAATTACTTCCCGAGGTTGTTAAGCATGTCACAGAGGAAATTGACAGAAATATAGCTGATGGAAATCCTTTTACTTGTCCTCTTCATTATTGTTGTGTCTGTAAAGGATTGGAAAACAGTATGGATCCTGAGTTGCAGTTTGCTGTTTGTAGGCGTTGTCCAAAGGCGTATCATCGTAAATGTTTGCCAAGAGAAATTATTGCTGACAACAATGTTATACAAAGGGCTTGGGAAGGTCTTCTACCAAAGAACCGCATTCTTATATATTGCTTAAATCATGAGATTGATCCTGAACTTGGCACTCCTACAAGAGATCATATAAAATTCCCTGATACTACTGTTGTGCAGAAAAAGCCTTCAGCTAAAAGAAGGGTTATTTTGAAGAAAAATATTGACATAGATAAATCATCTGGCAAAAGCATTTCTAATGGATCTAAATTGACCGGAAAACTGTCTTCTGACAAAGTTGGTGGCAATAAGTCATCTAAGAAGAGGATTCATGGTTCAAATAGGTCAAGAAAGCCAAAATCAAAAAAACCATCAAGGTGTTTGACTGAAAATAAGATGTTAATCTCGATGAATATTGAAATTGATGACTCCCAGCAAAAATTTAACCAGCTTACAGTTGGTGAGAAATTGCATGCGGATGAGGGTTCGGAGCAAATCGAGCTTGGCAATCAGATAAATAATGTGAATAATGAGTCGCTGTCATTGGATGCTGATTCGGAAAAGAGATTGTTGGGATTGTTTAAGGAAGCTACTTCATCCATTACATTGGACAGTGTCTTAGAAAAGCACATATTTGCTTCTACTCATAGTCACATTTTGAGAAATGGTGCGGAGAAGACCATTACAATGGAGAAATTGGAAGACTCAGTTAATGCTGTTCAATCAGCTTTAAGGATGCTAGAGAGTGGATGCAGTATTCAGGAGGCAAAAGCTGTTTGTGATCCTGATGTTCTGAAACAGATATTTAAGTGGAAGGATGAGCTGAAAATATATCTTGCACCTGTTCTAAATGGTAACCGCTATACATCATATGGTCATGTGGAAAAGCTAGAAGGGGCAACTAGGGGATTCTCTACAGTGATAGTGGGTGATGATTCTTTTGGTGGGATTGGTTTAAGTAGTAGTATTGCTGATAAACTTCATTGGTATGTTCAGAATGGTGATACGATTGTGGACTTCAGCTGTGAAGCTAATGATTTTGGCATCCCCATGAAAAAAAGACTTGAGGAGACAGGGAAGAAATGTTCATACAGAAACTATGATTTTCTTCCAACAAAGAATGATCTTAGTTCTGAAAGGAGGGATTGGATGACTGTCCAACCAACCACCGAGTTACCCACAGGGTCGCAGTTGATCATCGGGCTCAGCCCTCCCTTTAGCAATACGGCAGCATTGGCTAACGAGTTTATAGATAAGGCTCTTGAGTTTAAACCAAAACTCCTAATTCTTATATCACCACCAGAGATAGAGAGGCATGACCCTTTTTCCATAGTGCTAAATAAAAAACTCTCACTGTATGATCTTATATGGGAGGATGAGAATTTTCTATTAGACACGGTTAGTCTCTCTGTTTCTACCTGCATGGAGCAAAGGAATATAAGTCCGCCAATTCTCTCCCTTTGGAGCCGCTCTGACTGGACTACCAAACACAAGGTCATAGCCCGAGAGCATGGTCATGTGTGCCGTGAGAATGTTCATAACTCTGACACGGTGGCTGCTGCTGTTCATGCTACCGGTGGAAATTATGCTGATAATTCAAAGTTAACTGATGACCAAGAAGATCAAGCAGCTGAAAGGGATGGTCAGAAAAGAAGCTTACTTTATGCTAATGTTGACAAAGAGAATCAAGGGGAACAGGAATATAGGAAAGGCAAGTCTGGCAAGTCACGAAGTAAGAGAAAACGTTTTGAGGAAAGTAATATAACACAAGTAGGTGTGATCTCACCAGCCAAAAGGCAGGCTGTAAATAAAATGCCGAGTGCAGTAGCCGACCAGACTCAATCCAATCGAATCAATGGGAAATCCTCAGCGCTATCTGGTCACGATCCTTCTCCTGGCCACCCGGGAAATTGTAATGAGCAAGTAATTTCACGAACTGGGTCATCTTGTAAGACGAATACACCAGCGATTGGACGATCTGCACTTCCAGCAGGTAAATTAAACCATGTCAAGACAAGTTCTTTGGGTTCTGAACCTCGTACATTCATTAAAAGGGGCAGTTTTGGAGGTGGGTTGCAAGGATTTGCTTCTTGTCCGAACTCCGGTTATGCGAGCCAACATTCATGTGGTTGGCTCGAAGAGTAG	3303	0.4172	MKRGRSYSDNESEAESETEVQSVSVSNYHLVDDEDNPVTFAVLPIQWSDSENSGACKEKVFLDGDADSRLRKIFMQVTAWRFDLSSERPEVFLLAKDGRWIKLQKPRKGFRETIRSVFVTLYFLHGVKGKRQMSVGSLLQDLSQDKELSFYGFKPSKNDLSDHVLLIGEASKRDADLAKSKQLLLMVLEKLNSQKLLDEEVNDFEQPGLPVVGYDSDMIGKANEESEEMDALDVCALCDNGGNVTCCDGMCMRSFHATEEAGFENSCVSLGFTQKEVDEIPNFYCKNCEYRQHQCFACGKLGSSDEVNGAEVIKCASVTCDRFYHPHCVAKLLPEVVKHVTEEIDRNIADGNPFTCPLHYCCVCKGLENSMDPELQFAVCRRCPKAYHRKCLPREIIADNNVIQRAWEGLLPKNRILIYCLNHEIDPELGTPTRDHIKFPDTTVVQKKPSAKRRVILKKNIDIDKSSGKSISNGSKLTGKLSSDKVGGNKSSKKRIHGSNRSRKPKSKKPSRCLTENKMLISMNIEIDDSQQKFNQLTVGEKLHADEGSEQIELGNQINNVNNESLSLDADSEKRLLGLFKEATSSITLDSVLEKHIFASTHSHILRNGAEKTITMEKLEDSVNAVQSALRMLESGCSIQEAKAVCDPDVLKQIFKWKDELKIYLAPVLNGNRYTSYGHVEKLEGATRGFSTVIVGDDSFGGIGLSSSIADKLHWYVQNGDTIVDFSCEANDFGIPMKKRLEETGKKCSYRNYDFLPTKNDLSSERRDWMTVQPTTELPTGSQLIIGLSPPFSNTAALANEFIDKALEFKPKLLILISPPEIERHDPFSIVLNKKLSLYDLIWEDENFLLDTVSLSVSTCMEQRNISPPILSLWSRSDWTTKHKVIAREHGHVCRENVHNSDTVAAAVHATGGNYADNSKLTDDQEDQAAERDGQKRSLLYANVDKENQGEQEYRKGKSGKSRSKRKRFEESNITQVGVISPAKRQAVNKMPSAVADQTQSNRINGKSSALSGHDPSPGHPGNCNEQVISRTGSSCKTNTPAIGRSALPAGKLNHVKTSSLGSEPRTFIKRGSFGGGLQGFASCPNSGYASQHSCGWLEE	1100

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst8g00934	1100	Coils	Coil	616	636	-	-
	Spst8g00934	1100	MobiDBLite	consensus disorder prediction	920	940	-	-
	Spst8g00934	1100	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	293	382	IPR013083	-
	Spst8g00934	1100	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	231	292	IPR013083	-
	Spst8g00934	1100	CDD	PHD3_NSD	360	423	-	-
	Spst8g00934	1100	PANTHER	PHD FINGER-CONTAINING PROTEIN DDB_G0268158	18	901	-	-
	Spst8g00934	1100	MobiDBLite	consensus disorder prediction	992	1012	-	-
	Spst8g00934	1100	MobiDBLite	consensus disorder prediction	492	508	-	-
	Spst8g00934	1100	MobiDBLite	consensus disorder prediction	914	1044	-	-
	Spst8g00934	1100	MobiDBLite	consensus disorder prediction	1	21	-	-
	Spst8g00934	1100	MobiDBLite	consensus disorder prediction	468	486	-	-
	Spst8g00934	1100	SMART	PHD_3	361	424	IPR001965	-
	Spst8g00934	1100	SMART	PHD_3	294	360	IPR001965	-
	Spst8g00934	1100	SMART	PHD_3	234	289	IPR001965	-
	Spst8g00934	1100	CDD	PHD2_NSD	294	359	-	-
	Spst8g00934	1100	Pfam	Cytosine specific DNA methyltransferase replication foci domain	24	136	IPR022702	-
	Spst8g00934	1100	MobiDBLite	consensus disorder prediction	468	515	-	-
	Spst8g00934	1100	MobiDBLite	consensus disorder prediction	948	972	-	-
	Spst8g00934	1100	MobiDBLite	consensus disorder prediction	1023	1042	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst8g00934	Spst-Chr8	8257565	8268040	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst8g00934	-		-	gmx:100806429	1342.79

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst8g00934	8	8257565	8268040	Spst8g00934	8	8257565	8268040	ECH