Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi1g1361 Acco04g1833 . Accr8g00855 . Adu10g00710 . . . . . . Ahy20g0984 . Aip10g01031 . . . Amo20g0912 . . Arst10g00909 . . . Bisa08g2712 . . . . . . . Dere03g0100 . . Dod04g0599 Enph6g0103 . Glsi02g0099 . . . . . . . . . . . . . . . . . . . . . Lapu6g00093 . Lasa5g02627 . Lele21g1299 . Lele23g0733 . . . . . . . . . Mepo3g06231 . Mesa9g03679 . Mibi09g0861 . Mtr3g2820 . . . Phco2g02961 . Prci4g2084 . . . Pste7g02386 . . Pte2g02703 . . Pumo1g00438 . Pvu1g2683 . Rops11g03733 . Seca6g01729 . . . . . Sto3g2861 . Tpr2g4687 . Trre5g03120 . Tsu07g02730 . Vian2g03170 . Vifa2g02468 . Vimu6g01531 . Viun1g03440 . Vivi3g03344 . . .
Vvi1g1362 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1363 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1364 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1365 Acco04g1832 . Accr8g00856 . Adu10g00705 . . . . . . Ahy20g0981 . Aip10g01026 . . . Amo20g0909 . . Arst10g00906 . . . Bisa08g2713 . . . . . . . Dere03g0099 . . Dod04g0600 Enph6g0101 . Glsi02g0098 . . . . Gma18g00079 . . . . . . . . . . . . . . . . . . Lasa5g02626 . Lele21g1298 . Lele23g0734 . . . . . . . . . Mepo3g06230 . Mesa9g03678 . Mibi09g0873 . Mtr3g2819 . . . Phco2g02962 . Prci4g2081 . . . Pste7g02387 . . . . . Pumo1g00439 . Pvu1g2684 . Rops11g03731 . Seca6g01728 . Spst1g01907 . . . Sto3g2860 . Tpr2g4686 . Trre5g03118 . Tsu07g02729 . Vian2g03171 . Vifa2g02466 . Vimu6g01528 . Viun1g03442 . Vivi3g03345 . . .
Vvi1g1366 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1367 . . . . . . . . . . . Ahy20g0980 . Aip10g01025 . . . Amo20g0908 . . . . . . . . . . . . . . . . . Dod04g0601 . . . . . . . Gma18g00078 . . . . . . . . . . . . . . . . . . Lasa5g02624 . . . . . . . . . . . . . Mepo3g06229 . Mesa9g03677 . . . Mtr3g2818 . . . Phco2g02963 . . . . . Pste7g02388 . . . . . Pumo1g00440 . Pvu1g2685 . Rops11g03729 . Seca6g01727 . Spst1g01905 . . . . . Tpr2g4685 . Trre5g03117 . Tsu07g02728 . . . Vifa2g02465 . Vimu6g01526 . Viun1g03444 . Vivi3g03356 . . .
Vvi1g1368 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1369 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1370 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi1g1361 Chr1 19784818 19799018 -
Acco Acco04g1833 Chr04 29604902 29614996 +
Accr Accr8g00855 Chr8 19398863 19408292 -
Adu Adu10g00710 Chr10 8556368 8566835 +
Ahy Ahy20g0984 Chr20 14278198 14285573 +
Aip Aip10g01031 Chr10 13644764 13655021 +
Amo Amo20g0912 Chr20 15180756 15191226 +
Arst Arst10g00909 Chr10 8204432 8214815 +
Bisa Bisa08g2712 Chr08 62474214 62486083 -
Dere Dere03g0100 Chr03 4337810 4348833 +
Dod Dod04g0599 Chr04 8630991 8641550 -
Enph Enph6g0103 Chr6 4076050 4085537 +
Glsi Glsi02g0099 Chr02 675749 684184 +
Lapu Lapu6g00093 Chr6 706170 717839 +
Lasa Lasa5g02627 Chr5 493441470 493450026 +
Lele Lele21g1299 Chr21 21125570 21143617 +
Lele Lele23g0733 Chr23 5896544 5913354 -
Mepo Mepo3g06231 Chr3 76485720 76493818 +
Mesa Mesa9g03679 Chr9 68373824 68381276 +
Mibi Mibi09g0861 Chr09 13070555 13080097 -
Mtr Mtr3g2820 Chr3 42171096 42178668 +
Phco Phco2g02961 Chr2 58488452 58495742 -
Prci Prci4g2084 Chr4 32426595 32447552 +
Pste Pste7g02386 Chr7 22606147 22610955 -
Pte Pte2g02703 Chr2 45924338 45931998 -
Pumo Pumo1g00438 Chr1 6030672 6037506 -
Pvu Pvu1g2683 Chr1 51529141 51536305 -
Rops Rops11g03733 Chr11 71029619 71032835 +
Seca Seca6g01729 Chr6 71976379 71985055 +
Sto Sto3g2861 Chr3 33227539 33243784 +
Tpr Tpr2g4687 Chr2 52180908 52187955 +
Trre Trre5g03120 Chr5 26523753 26529652 +
Tsu Tsu07g02730 Chr07 31981653 31988715 +
Vian Vian2g03170 Chr2 52181721 52188316 -
Vifa Vifa2g02468 Chr2 646001904 646013810 +
Vimu Vimu6g01531 Chr6 14385815 14387811 +
Viun Viun1g03440 Chr1 41398184 41403895 -
Vivi Vivi3g03344 Chr3 56282428 56292775 -
Vvi Vvi1g1362 Chr1 19802437 19814079 -
Vvi Vvi1g1363 Chr1 19816505 19829033 -
Vvi Vvi1g1364 Chr1 19831890 19833346 -
Vvi Vvi1g1365 Chr1 19834919 19840992 -
Acco Acco04g1832 Chr04 29561549 29566057 +
Accr Accr8g00856 Chr8 19463449 19468271 -
Adu Adu10g00705 Chr10 8463832 8470483 +
Ahy Ahy20g0981 Chr20 14193936 14199237 +
Aip Aip10g01026 Chr10 13556515 13567083 +
Amo Amo20g0909 Chr20 15108521 15113906 +
Arst Arst10g00906 Chr10 8111901 8117233 +
Bisa Bisa08g2713 Chr08 62486985 62490695 -
Dere Dere03g0099 Chr03 4318773 4325710 +
Dod Dod04g0600 Chr04 8644206 8650298 -
Enph Enph6g0101 Chr6 4034331 4037755 +
Glsi Glsi02g0098 Chr02 671024 674636 +
Gma Gma18g00079 Chr18 632961 637738 +
Lasa Lasa5g02626 Chr5 493280360 493280851 +
Lele Lele21g1298 Chr21 21119355 21122892 +
Lele Lele23g0734 Chr23 5918068 5919262 -
Mepo Mepo3g06230 Chr3 76479327 76484011 +
Mesa Mesa9g03678 Chr9 68367177 68371731 +
Mibi Mibi09g0873 Chr09 13698619 13709445 -
Mtr Mtr3g2819 Chr3 42164501 42169447 +
Phco Phco2g02962 Chr2 58497770 58502467 -
Prci Prci4g2081 Chr4 32408916 32412435 +
Pste Pste7g02387 Chr7 22627106 22632174 -
Pumo Pumo1g00439 Chr1 6041806 6046700 -
Pvu Pvu1g2684 Chr1 51538244 51543323 -
Rops Rops11g03731 Chr11 71007049 71011894 +
Seca Seca6g01728 Chr6 71938680 71944389 +
Spst Spst1g01907 Chr1 27328848 27333645 +
Sto Sto3g2860 Chr3 33213341 33216599 +
Tpr Tpr2g4686 Chr2 52171041 52176178 +
Trre Trre5g03118 Chr5 26516509 26521342 +
Tsu Tsu07g02729 Chr07 31965652 31970246 +
Vian Vian2g03171 Chr2 52191478 52196448 -
Vifa Vifa2g02466 Chr2 645932602 645935192 +
Vimu Vimu6g01528 Chr6 14373349 14378530 +
Viun Viun1g03442 Chr1 41405959 41411196 -
Vivi Vivi3g03345 Chr3 56297847 56300411 -
Vvi Vvi1g1366 Chr1 19850487 19856544 +
Vvi Vvi1g1367 Chr1 19857340 19861716 -
Ahy Ahy20g0980 Chr20 14169775 14179468 +
Aip Aip10g01025 Chr10 13528924 13540403 +
Amo Amo20g0908 Chr20 15084902 15094005 +
Dod Dod04g0601 Chr04 8663595 8672087 -
Gma Gma18g00078 Chr18 625341 626579 +
Lasa Lasa5g02624 Chr5 493165859 493166813 +
Mepo Mepo3g06229 Chr3 76473875 76476225 +
Mesa Mesa9g03677 Chr9 68362186 68363822 +
Mtr Mtr3g2818 Chr3 42159256 42161286 +
Phco Phco2g02963 Chr2 58508554 58511709 -
Pste Pste7g02388 Chr7 22644376 22645765 -
Pumo Pumo1g00440 Chr1 6051129 6053194 -
Pvu Pvu1g2685 Chr1 51549187 51552235 -
Rops Rops11g03729 Chr11 70963316 70966381 +
Seca Seca6g01727 Chr6 71871790 71874140 +
Spst Spst1g01905 Chr1 27284601 27286332 +
Tpr Tpr2g4685 Chr2 52163280 52165661 +
Trre Trre5g03117 Chr5 26511900 26513638 +
Tsu Tsu07g02728 Chr07 31934471 31936797 +
Vifa Vifa2g02465 Chr2 645119140 645120054 +
Vimu Vimu6g01526 Chr6 14362802 14364119 +
Viun Viun1g03444 Chr1 41416747 41418588 -
Vivi Vivi3g03356 Chr3 56610331 56611762 -
Vvi Vvi1g1368 Chr1 19868496 19868696 +
Vvi Vvi1g1369 Chr1 19877398 19878856 +
Vvi Vvi1g1370 Chr1 19884613 19889416 +