Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1367 ATGCCGAAATCGAACTTTTCGCTCGACATAACTGGAGATGGAAGATGTTTGTTCAGGTCAGTGGTCTATGGTGCTAGCCTGAGAGCAGGAAAGGCATGTCCAAGTGAGAAAATTCAGAGAGAACTTGCAGATGAGCTCAGAGAAAAAGTTGTAGATGAATTCATAAAGAGGCGAGCAGACACTGAATGGTTTCTTGAAGGTGATTTTGATGATTATGTTTTAAGGATGCGGCAGCCCCACATCTGGGGAGGAGAACCTGAGCTGCTCATGTCCTCACATGTCTTACAGATGCCTATCACAGTGTACATGTCAGAAAAGAACTCCAACGACCTTAAAGTTATAGCAGAATATGGTCAAGAGTATGGCAAGGAAGACCCAATCTGTGTTGTATATCATGGTTATGGACATTACGATGCATTGCAGAATCCTGCCAGCACTAAAAAATCCAAGTCGCGCAAGCAAAGATGA 468 0.4359 MPKSNFSLDITGDGRCLFRSVVYGASLRAGKACPSEKIQRELADELREKVVDEFIKRRADTEWFLEGDFDDYVLRMRQPHIWGGEPELLMSSHVLQMPITVYMSEKNSNDLKVIAEYGQEYGKEDPICVVYHGYGHYDALQNPASTKKSKSRKQR* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1367 155 ProSiteProfiles OTU domain profile. 5 143 IPR003323 -
Vvi1g1367 155 SUPERFAMILY Cysteine proteinases 8 142 IPR038765 -
Vvi1g1367 155 PANTHER HIV-INDUCED PROTEIN-7-LIKE PROTEASE 10 145 - -
Vvi1g1367 155 Pfam OTU-like cysteine protease 11 137 IPR003323 -
Vvi1g1367 155 CDD OTU_plant_OTU4-like 10 141 - -
Vvi1g1367 155 Gene3D - 3 150 - -
Vvi1g1367 155 FunFam OTU domain-containing protein 2 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1367 Vvi-Chr1 19857340 19861716 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1367 K18342 - vvi:100251219 321.627