Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere03g0100 | ATGAAACTGGTTCCGAGAGAGGTCGAGAAGCTAAGCGTGCACAATGCTGGGTATCTTGCCCAAAAACGTCTTGCTCGGGGTTTAAGACTCAATTATACTGAAGCTGTCGCTCTCATAGCCACTCAGATTTTAGAATTCGTTCGTGATGGTGAAAAGACTGTTGCTGATTTAATGGACATTGGGAAACGACTCTTAGGAAGGAGACAAGTTCTTCCAGCCGTTCCGCATCTCTTGGATGCTGTACAGGTTGAAGGCACCTTCCCTGATGGGACTAAGTTAGTCACCATTCATGATGCAATTGCTTGTGAGAATGGTGACCTAGAACTTGCATTACATGGTTCTTTTCTTCCGGTACCTTCACTTGACAAGTTTCCCACAACAGAAGATAGCAGAATACCTGGCGAATTAGTTTTTGGAGGTGGAAATCTGACTCTTAACTCTGGAAGGAAAGCTGTAATTCTCAGAGTTGTCAACATTGGAGACAGGCCAATACAGGTTGGCAGCCACTATCACTTCATTGAAGTAAATCCCTACTTAGTATTTGATCGAAGGAAAGCATATGGCATGCGTCTCAATATCGCAGCAGGGACTGCAACACGCTTTGAGCCAGGGGAAAGTAAGAGTGTTGTACTTGTAAGCATTGGAGGTAACAAAGTCATTAGAGGTGGTAATGGCATTGCTGATGGCCCGGTTAATGATTCCAATTGGAGGGAAGCCATGGAGGCTGTAATCAGAAGGAAGTTTGGACACATGGATGAGGAAAATGCAAGTGAAGGCATTACTGGAGAAGACTCTTCTTTCACAACAATAATTTCTCATGAGAAATATGCTAACATGTATGGACCTACCACTGGTGACAAAATCCGTCTTGGAGACACTGACTTGTTTGCTGAAATTGAAAAAGATTTTTCTGTCTATGGCGATGAATGTGTTTTTGGAGGCGGGAAAGTTATAAGAGATGGAATGGGTCAGTCTTGCGGGCATCCACCTTCTGGCTCCTTGGACACTGTAATAACGAATGCTGTGATCATTGATTACAGTGGGATTATCAAAGCAGATATTGGTATTAAAGATGGCCTTATTGTATCAATTGGAAAAGCAGGAAATCCAGACATCATGAATGGTGTATTTCCTAATATGATTATTGGGGCCAGCACTGAAGTTATTGCTGGAGAAGGGTTAATTGTAACTGCTGGGGCCATAGATTGTCATGTGCATTTTATATGCCCTCAATTAGTATACGAAGCAATATCAAGTGGCATCACAACTTTAGTGGGAGGTGGAACAGGACCAGCTGATGGAACACGCGCTACAACTTGCACACCAGCACCAATTCAAATGAAATTAATGCTGCAATCAACAGATGACCTGCCATTGAACTTTGGTTTTACTGGCAAAGCATGTTTTCTTCATTCGCTTCTGTTCATACTGAATGCTTGTCCATCTGGGAATTGTGCCAAGCCTGATGAACTACAAGAAATAGTCAGGGCTGGAGCTATGGGACTGAAGCTGCATGAGGACTGGGGAAGTACCCCAGCTGCAATAGACAGTTGTTTGACTGTTGCAGAACACTATGACATCCAGGTTAATATACATACTGACACATTAAATGAAGCTGGATTTGTGGAACATACAATCACTGCATTTAAAGGAAGAACTATTCATACATACCACAGTGAAGGCGCCGGTGGTGGCCATGCTCCAGATATCATCAAAGTATGTGGTGTGAAGAATGTCCTGCCCTCATCAACTAACCCTACACGACCTTTTACATCTAATACTATAGATGAACATTTTGACATGTTGATGGTCTGCCATCACCTTGATAAGGACATTCCAGAAGATGTAGCTTTTGCAGAATCAAGGATAAGGGCTGAAACAATTGCTGCTGAAGGTATTTTGCATGATATGGGGGCAATTAGCATTATATCTTCTGACTCACAGGCTATGGGTCGAATTGGAGAGGTGATATGTAGAACTTGGCAGACTGCGAATAAGATGAAGTTGCAAAGAGGACCACTTCAGCCTGGTGAAACAGACAATGACAACTCTCGAATCAAACGATATGTTGCAAAATATACTATAAATCCAGCTATAGCAAATGGCTTCTCACAATTTGTTGGCTCAGTTGAGGTGGGTAAGTTAGCTGATCTCGTGCTATGGAAGCCATCATTTTTTGGTGCAAAACCAGAAATGGTTATCAAAGGTGGTGCTGTTGCATGGGCTAACATAGGCGACCCAAATGCAAGCATCCCCACGCCTGAACCGGTGATTATGAGGCCTATGTTCGGTGCATTTGGCAAGGCTGGTAGTGCTCACTCCATTGCTTTTGCAGCATTAGAGAACGGAGTGAGAGCTTCATACGGTCTGAGCAAGAGGGTGGAAGCCGTGCGGAATGTGAGGAAGCTTACGAAACTAGACATGAAGCTCAATGATGCCCTTCCTCAAATCACTGTGGACCCCGAAACGTATACTGTTACTGCTGATGGGGAGGTTCTTATCTGCACTGCAGCTACTACTGTTCCCCTTTCTCGAAACTACTTCCTCTTTTAA | 2553 | 0.4356 | MKLVPREVEKLSVHNAGYLAQKRLARGLRLNYTEAVALIATQILEFVRDGEKTVADLMDIGKRLLGRRQVLPAVPHLLDAVQVEGTFPDGTKLVTIHDAIACENGDLELALHGSFLPVPSLDKFPTTEDSRIPGELVFGGGNLTLNSGRKAVILRVVNIGDRPIQVGSHYHFIEVNPYLVFDRRKAYGMRLNIAAGTATRFEPGESKSVVLVSIGGNKVIRGGNGIADGPVNDSNWREAMEAVIRRKFGHMDEENASEGITGEDSSFTTIISHEKYANMYGPTTGDKIRLGDTDLFAEIEKDFSVYGDECVFGGGKVIRDGMGQSCGHPPSGSLDTVITNAVIIDYSGIIKADIGIKDGLIVSIGKAGNPDIMNGVFPNMIIGASTEVIAGEGLIVTAGAIDCHVHFICPQLVYEAISSGITTLVGGGTGPADGTRATTCTPAPIQMKLMLQSTDDLPLNFGFTGKACFLHSLLFILNACPSGNCAKPDELQEIVRAGAMGLKLHEDWGSTPAAIDSCLTVAEHYDIQVNIHTDTLNEAGFVEHTITAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPFTSNTIDEHFDMLMVCHHLDKDIPEDVAFAESRIRAETIAAEGILHDMGAISIISSDSQAMGRIGEVICRTWQTANKMKLQRGPLQPGETDNDNSRIKRYVAKYTINPAIANGFSQFVGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAVAWANIGDPNASIPTPEPVIMRPMFGAFGKAGSAHSIAFAALENGVRASYGLSKRVEAVRNVRKLTKLDMKLNDALPQITVDPETYTVTADGEVLICTAATTVPLSRNYFLF | 850 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere03g0100 | 850 | CDD | Urease_beta | 132 | 231 | IPR002019 | GO:0035550|GO:0043419 | |
| Dere03g0100 | 850 | CDD | Urease_gamma | 5 | 100 | IPR002026 | GO:0016151|GO:0043419 | |
| Dere03g0100 | 850 | ProSitePatterns | Urease active site. | 603 | 619 | IPR017950 | GO:0009039 | |
| Dere03g0100 | 850 | Gene3D | - | 4 | 124 | IPR036463 | GO:0016151|GO:0043419 | |
| Dere03g0100 | 850 | CDD | Urease_alpha | 271 | 849 | IPR005848 | GO:0006807|GO:0009039|GO:0016151 | |
| Dere03g0100 | 850 | FunFam | Urease | 149 | 267 | - | - | |
| Dere03g0100 | 850 | PRINTS | Urea amidohydrolase (urease) protein signature | 687 | 702 | IPR005848 | GO:0006807|GO:0009039|GO:0016151 | |
| Dere03g0100 | 850 | PRINTS | Urea amidohydrolase (urease) protein signature | 581 | 598 | IPR005848 | GO:0006807|GO:0009039|GO:0016151 | |
| Dere03g0100 | 850 | PRINTS | Urea amidohydrolase (urease) protein signature | 713 | 726 | IPR005848 | GO:0006807|GO:0009039|GO:0016151 | |
| Dere03g0100 | 850 | PRINTS | Urea amidohydrolase (urease) protein signature | 620 | 636 | IPR005848 | GO:0006807|GO:0009039|GO:0016151 | |
| Dere03g0100 | 850 | ProSiteProfiles | Urease domain profile. | 399 | 850 | IPR017951 | GO:0006807|GO:0009039|GO:0016151 | |
| Dere03g0100 | 850 | Pfam | Amidohydrolase family | 395 | 737 | IPR006680 | GO:0016787 | |
| Dere03g0100 | 850 | FunFam | Urease subunit alpha | 4 | 124 | - | - | |
| Dere03g0100 | 850 | Gene3D | Urease, beta subunit | 149 | 268 | IPR036461 | - | |
| Dere03g0100 | 850 | NCBIfam | urease subunit gamma | 1 | 101 | IPR002026 | GO:0016151|GO:0043419 | |
| Dere03g0100 | 850 | Gene3D | Urease, subunit C, domain 1 | 269 | 766 | IPR011059 | GO:0016810 | |
| Dere03g0100 | 850 | Pfam | Urease alpha-subunit, N-terminal domain | 271 | 389 | IPR011612 | - | |
| Dere03g0100 | 850 | PIRSF | Urease | 1 | 850 | IPR008221 | GO:0006807|GO:0009039|GO:0016151 | |
| Dere03g0100 | 850 | PANTHER | UREASE | 1 | 850 | - | - | |
| Dere03g0100 | 850 | Gene3D | - | 399 | 831 | - | - | |
| Dere03g0100 | 850 | SUPERFAMILY | Metallo-dependent hydrolases | 399 | 850 | IPR032466 | - | |
| Dere03g0100 | 850 | NCBIfam | urease subunit alpha | 271 | 850 | IPR005848 | GO:0006807|GO:0009039|GO:0016151 | |
| Dere03g0100 | 850 | SUPERFAMILY | Composite domain of metallo-dependent hydrolases | 695 | 765 | IPR011059 | GO:0016810 | |
| Dere03g0100 | 850 | SUPERFAMILY | Composite domain of metallo-dependent hydrolases | 271 | 447 | IPR011059 | GO:0016810 | |
| Dere03g0100 | 850 | Pfam | Urease, gamma subunit | 1 | 100 | IPR002026 | GO:0016151|GO:0043419 | |
| Dere03g0100 | 850 | Pfam | Urease beta subunit | 133 | 229 | IPR002019 | GO:0035550|GO:0043419 | |
| Dere03g0100 | 850 | Pfam | Urease subunit beta-alpha linker domain | 231 | 264 | IPR040881 | - | |
| Dere03g0100 | 850 | SUPERFAMILY | Urease, gamma-subunit | 1 | 104 | IPR036463 | GO:0016151|GO:0043419 | |
| Dere03g0100 | 850 | Hamap | Urease subunit beta [ureB]. | 131 | 231 | IPR002019 | GO:0035550|GO:0043419 | |
| Dere03g0100 | 850 | ProSitePatterns | Urease nickel ligands signature. | 397 | 410 | IPR029754 | GO:0016151 | |
| Dere03g0100 | 850 | SUPERFAMILY | Urease, beta-subunit | 132 | 260 | IPR036461 | - | |
| Dere03g0100 | 850 | Hamap | Urease subunit alpha [ureC]. | 269 | 850 | IPR005848 | GO:0006807|GO:0009039|GO:0016151 | |
| Dere03g0100 | 850 | NCBIfam | urease subunit beta | 132 | 232 | IPR002019 | GO:0035550|GO:0043419 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Dere03g0100 | 03 | 4337810 | 4348833 | Dere03g0100 | 03 | 4337810 | 4348833 | ECH |