Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02468 ATGCTAACAAGTATGGCCCCACTACTGGTGACAAAATTCGTCTTGGTGACACTAACTTGTTTGGGGGAAATTGAAAAAGACTTTGCTGTCTATGGTGATGAATGTGTTTTTGGAGATATTGGTATTAAGGATGGCCTTATTGCCTCTATTGGAAAAGCAGGAAATCCAGAGGTCATGGATGGTGTATTTGTTAATATGATCATCGGGGCTAATACTGAAGTTATTGCTGGAGAGGGCTTTATTGTAACAGCTGGTGCTATAGATTGTCATGTGCATTTTATATGCCCTCAATTAGTATATGAAGCCATATCAAGTGGGATCACAACATTGGTGGGAGGAGGAACTGGACCAGCTTTTGGAACTCGTGCTACAACTTGCACACCTGCACCGATTCAGATGAAAATGATGCTGCAATCAACAGATGACCTTCCCCTGAACTTCGGCTTTACTGGAAAAGGGAATTGTGCCAAGCCCGATGAGTTACATGAAATAGTGAAAGCTGGAGCTATGGGACTGAAGCTGCATGAAGATTGGGGAACTACACCAGCCGCAATAGAATGTTGCTTGGACGTTGCCGAAAAACATGATATCCAGGTTAACATACATACTGACACCTTAAATGAATCTGGGTTTGTGGAACACACAATTGCTGCATTTAAAGGAAAAAATATTCATGCTTACCACAGTGAAGGTGCGGGTGGTGGCCATGCTCCAGATATCATCAAAGTATGTGGTGTAAAGAATGTCCTACCCTCATCAACAAATCCTACACGTCCCTTTACATCAAATACCATAGACGAGCATCTTGACATGCTGATGGTATGCCATCATCTTGATAAGGATAGTCCAGAAGATGTTGCTTTTGCAGAATCAAGGATAAGAGCAGAAACAATCGCTGCTGAAGATATTTTGCATGATATGGGTGCAATTAGCATTATTTCTTCTGATTCACAGGCTATGGGTAGAATTGGAGAGGTGATAAGCAGAACTTGGCAAACTGCCGATAAGATGAAGTCACAAAGAGGACCACTGCCTGATGATTGCAACAATGACAACTTTCGAATCAAACGTTATGTTGCAAAGTACACTATAAATCCAGCTATAGCAAATGGTTTGTCACAGTATATTGGTTCAGTTGAGGTGGGAAAGTTAGCTGATCTTGTATTATGGAAACCGTCCTTTTTTGGAGCAAAACCAGAAATGGTGATCAAAGGTGGTGACGTTGCATGGGCTGAAATGGGTGACCCAAACGCTAGCATCCCAACACCTGAACCGGTGATTATGAGACCTATGTTTGGAGCGTATGGCAAGGCTGGAAGTGCAAACTCGATTGCTTTTGCAGCTTTGGACTACGGTGTAAAAGCTTTATATGGACTTGACAAGAGGGTGGAAGCGGTGGAGAATGTGAGAAAGATCAGCAAACTAGACATGAAACTGAACGACGCCCTTCCAGAAATCACTGTGGACCCTGAGACATACACAGTAACTGCAGATGGAGAGGTTCTAACCTGCACTCCGGCCACTACTGTTCCTCTTTCTCGAAATTACTACCTCTTCTAA 1560 0.4288 MLTSMAPLLVTKFVLVTLTCLGEIEKDFAVYGDECVFGDIGIKDGLIASIGKAGNPEVMDGVFVNMIIGANTEVIAGEGFIVTAGAIDCHVHFICPQLVYEAISSGITTLVGGGTGPAFGTRATTCTPAPIQMKMMLQSTDDLPLNFGFTGKGNCAKPDELHEIVKAGAMGLKLHEDWGTTPAAIECCLDVAEKHDIQVNIHTDTLNESGFVEHTIAAFKGKNIHAYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPFTSNTIDEHLDMLMVCHHLDKDSPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTADKMKSQRGPLPDDCNNDNFRIKRYVAKYTINPAIANGLSQYIGSVEVGKLADLVLWKPSFFGAKPEMVIKGGDVAWAEMGDPNASIPTPEPVIMRPMFGAYGKAGSANSIAFAALDYGVKALYGLDKRVEAVENVRKISKLDMKLNDALPEITVDPETYTVTADGEVLTCTPATTVPLSRNYYLF 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02468 519 PRINTS Urea amidohydrolase (urease) protein signature 251 268 IPR005848 GO:0006807|GO:0009039|GO:0016151
Vifa2g02468 519 PRINTS Urea amidohydrolase (urease) protein signature 382 395 IPR005848 GO:0006807|GO:0009039|GO:0016151
Vifa2g02468 519 PRINTS Urea amidohydrolase (urease) protein signature 356 371 IPR005848 GO:0006807|GO:0009039|GO:0016151
Vifa2g02468 519 PRINTS Urea amidohydrolase (urease) protein signature 290 306 IPR005848 GO:0006807|GO:0009039|GO:0016151
Vifa2g02468 519 Pfam Amidohydrolase family 81 405 IPR006680 GO:0016787
Vifa2g02468 519 NCBIfam urease subunit alpha 39 519 IPR005848 GO:0006807|GO:0009039|GO:0016151
Vifa2g02468 519 CDD Urease_alpha 23 518 IPR005848 GO:0006807|GO:0009039|GO:0016151
Vifa2g02468 519 SUPERFAMILY Metallo-dependent hydrolases 86 519 IPR032466 -
Vifa2g02468 519 PANTHER UREASE 39 519 - -
Vifa2g02468 519 Pfam Urease alpha-subunit, N-terminal domain 39 75 IPR011612 -
Vifa2g02468 519 Gene3D - 85 519 - -
Vifa2g02468 519 Gene3D Urease, subunit C, domain 1 39 435 IPR011059 GO:0016810
Vifa2g02468 519 ProSitePatterns Urease nickel ligands signature. 83 96 IPR029754 GO:0016151
Vifa2g02468 519 SUPERFAMILY Composite domain of metallo-dependent hydrolases 5 429 IPR011059 GO:0016810
Vifa2g02468 519 Hamap Urease subunit alpha [ureC]. 1 519 IPR005848 GO:0006807|GO:0009039|GO:0016151
Vifa2g02468 519 ProSiteProfiles Urease domain profile. 85 519 IPR017951 GO:0006807|GO:0009039|GO:0016151
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02468 Vifa-Chr2 646001904 646013810 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02468 K01427 - gmx:547672 873.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02468 2 646001904 646013810 Vifa2g02468 2 646001904 646013810 ECH