Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0908 ATGCCGCAATCAGAAAAGTCATTCAGTAACAAACTTCCAATAATCTGGATTCCAGGGGATGGCAGATGTTTGTTTAGGTCTGTAGTGTATGGTGCATGCCTTAGAAGAAGGGAGCCATCTCCAAGTCTCAATAGGCAAAAAGAACTTGCAGATGACCTTAGAGCCAAAGTCGTAGATGAATTCATCAAGAGGAGGGCAGATACTGAATGGTTTCTTGAGGATGACTTTGACACCTACACAGGACAAATGCGAAAGCCTCACGTTTGGGGAGGAGAACCTGAACTTCTTATGTCCTCACATGTTTTACAGATGCCTATAACAGTGGTGATGGAGGATAAGAAATCCAAGAATCTTAAAGTAATAGCTGAATATGGTCAAGAGTATGGTGAGGATAACCCAATTTGTGTTATCTATCACGGTTATGGCCACTATGATGCCTTCAAGAATTCCAATAACACTACATATTCGCAGAAATGA 477 0.413 MPQSEKSFSNKLPIIWIPGDGRCLFRSVVYGACLRRREPSPSLNRQKELADDLRAKVVDEFIKRRADTEWFLEDDFDTYTGQMRKPHVWGGEPELLMSSHVLQMPITVVMEDKKSKNLKVIAEYGQEYGEDNPICVIYHGYGHYDAFKNSNNTTYSQK* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0908 158 SUPERFAMILY Cysteine proteinases 12 149 IPR038765 -
Amo20g0908 158 ProSiteProfiles OTU domain profile. 12 150 IPR003323 -
Amo20g0908 158 PANTHER OS01G0900900 PROTEIN 10 156 - -
Amo20g0908 158 Gene3D - 2 157 - -
Amo20g0908 158 Pfam OTU-like cysteine protease 18 144 IPR003323 -
Amo20g0908 158 PANTHER OTU DOMAIN CONTAINING PROTEIN 10 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0908 Amo-Chr20 15084902 15094005 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0908 K18342 - gmx:100792132 268.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0908 20 15084902 15094005 Amo20g0908 20 15084902 15094005 ECH