Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1299 ATGAAGCTGCTTCCGAGAGAGATCGACAAGCTAACCCTGCATAATGCCGGTTTTCTTGCCCAAAAACGTCTTGCTCGTGGTTTAAGACTTAATTATGCTGAAGCTGTCGCTCTTATAGCGACACAGATTTTAGAATTCGTTCGTGATGGTGAAAAGACTGTTGCTCAACTAATGGACATTGGGAAACGACTCTTGGGAAGGAGACAAGTTCTTCCAGCCGTTCCACATCTCTTGGATGCTGTTCAGGTTGAAGGCACATTTCCTGATGGGACTAAGTTAGTCACCATTCATGATGCAATTGCTCGTGAGAATGGTGACCTAGAACTGGCATTATATGGTTCTTTTCTTCCAGTACCTTCACTTGACAAGTTTCCCCCAATAGAAGATAATAGAATACCTGGTGAGATAATTTGTAGAGGTGGAAATCTGACTCTTAACTCTGGAAGGAAAGCGGTAGTGCTCAAAGTTGTCAACATTGGAGACAGACCGATACAGGTTGGCAGCCACTATAACTTCATTGAAGTAAATCCCTATTTAGTCTTTGATCGAAGGAAAGCGTATGGCATGCGTCTTAATATAGCAGCAGGGACTGCAGTACGCTTTGAGCCAGGGGAAAGTAAATGCGTTGCACTTGTAAGCATTGGAGGTAACAAAGTCATCAGAGGTGGTAATGGCATTGGTGATGGACCAGTTAATGATTCCAATTTGGAAGCAGCCATGGAGGCTGTGAGAATAAGGAAATTCGGACATATGGAAGATGAAAATGCAAGTGAGGGTATTACAGGACAAGACTCTTCTTTCACCACAAGAATTTCTCGTGAGAAATATGCCAACATGTATGGCCCTGCTACTGGTGACAAAATCCGTCTTGGTGACACTGACTTGTTTGCTGAAATTGAAAAAGATTTTTCTGTCTGTGGTGATGAATGTGTTTTTGGAGGTGGGAAAGTTATAAGAGATGGAATGGGTCAGTCATGCGGGCATCCATCTTCTTGCACCTTGGACACTGTAATTACAAATGCTGTGATCATTGATTACAGTGGAATTATCAAAGCGGATATTGGTATTAAAGACGGCCATATTGTATCAATTGGAAAAGCAGGAAACCCAGATCTCATGAATGATGTATCTCCTAATATGTTTATTGGGGCCTGCACTGAAGTTATTGCTGGGGAAGGGTTAATTGTAACAGCCGGTGGCATAGACTGTCATGTGCATTTTATATGCCCTCAATTAGCATATGAGGCAATATCAAGCGGAATCACAACATTAGTGGGAGGTGGAACTGGACCAGCTGATGGAACACGGGCAACAACTTGCACACCAGCACCAATTCAGATGAAATTAATGCTGCAATCAACAGATCCCCTTCCACTGAACTTTGGTTTTACTGGCAAAGCATGTTTTCCTCATTCTCTTCTGTTTATATTGAATGCGTTTGGAAATTGTTCCAGGCCTAATGAACTACATGAAATAATCCAGGCTGGAGCTATGGGACTGAAGTTGCATGAGGACTGGGGAAGTACCCCAGCTGCAATAGATACTTGTTTAACTGTTGCAGAACAGCATGACATCCAGGTTAATATACATACTGATACATTAAATGAATCTGGATTTGTGGAACATACAATCGCTTCATTTAAGGGAAGAACTATTCATACTTATCACAGTGAAGGTGCTGGTGGTGGCCATGCTCCAGATATAATAAAAGTATGTGGTGAGAAGAATGTCCTGCCCTCGTCAACTAACCCTACACGACCTTTTACATCTAATACAATAGATGAACATCTTGACATGTTGATGGTCTGCCATCACCTTGATAAGAACATTCCAGAAGATGTAGCTTTTGCAGAATCTAGAATAAGGGCTGAAACAATTGCTGCTGAAGATATTTTGCATGATCTTGGAGCAATTAGCATTATATCTTCCGATTCACAGGCTATGGGTCGAATTGGAGAGGTGATATGTAGAACTTGGCAGACTGCCAATAAGATGAAGGTGCAGAGAGGACCGCTTCAGCCTAGGGATGATTCAGACAATGATAACTTTCGAATCAAACGATATGTTGCAAAATACACAATAAATCCAGCAATAGCAAATGGGTTCTCACAATTTATTGGTTCAGTTGAGGTGGGTAAGTTAGCTGATCTAGTGCTATGGAAACCATCATTTTTTGGTGCAAAACCAGAAATGGTTATCAAAGGCGGTGCAATTGCATGGGCTAACATGGGCGATCCAAATGCGAGCATCCCCACGCCTGAACCGGTGATGATGAGGCCTATGTTTGCTGCATTTGGCAAGGCTGCTAGTAGTCACTCCATTGCATTTGTGAGCAAGGCGGCGCTAGAGGACGGAGTAAAAGCTTCGTACAGTCTAAGCAAGAGGGTTGAAGCCGTGGCGAATGTGAGGAAGCTCACGAAACTAGACATGAAGCTCAACGACACGCTTCCTCGTATCACTGTTGACCCTGAAACTTACACTGTTACAGCTGATGACGAGGTTCTCACCTGCGATCCAGCCTCCTCTGTTCCCCTTTCTCGGAACTACTTCCTATTTTAA 2559 0.4299 MKLLPREIDKLTLHNAGFLAQKRLARGLRLNYAEAVALIATQILEFVRDGEKTVAQLMDIGKRLLGRRQVLPAVPHLLDAVQVEGTFPDGTKLVTIHDAIARENGDLELALYGSFLPVPSLDKFPPIEDNRIPGEIICRGGNLTLNSGRKAVVLKVVNIGDRPIQVGSHYNFIEVNPYLVFDRRKAYGMRLNIAAGTAVRFEPGESKCVALVSIGGNKVIRGGNGIGDGPVNDSNLEAAMEAVRIRKFGHMEDENASEGITGQDSSFTTRISREKYANMYGPATGDKIRLGDTDLFAEIEKDFSVCGDECVFGGGKVIRDGMGQSCGHPSSCTLDTVITNAVIIDYSGIIKADIGIKDGHIVSIGKAGNPDLMNDVSPNMFIGACTEVIAGEGLIVTAGGIDCHVHFICPQLAYEAISSGITTLVGGGTGPADGTRATTCTPAPIQMKLMLQSTDPLPLNFGFTGKACFPHSLLFILNAFGNCSRPNELHEIIQAGAMGLKLHEDWGSTPAAIDTCLTVAEQHDIQVNIHTDTLNESGFVEHTIASFKGRTIHTYHSEGAGGGHAPDIIKVCGEKNVLPSSTNPTRPFTSNTIDEHLDMLMVCHHLDKNIPEDVAFAESRIRAETIAAEDILHDLGAISIISSDSQAMGRIGEVICRTWQTANKMKVQRGPLQPRDDSDNDNFRIKRYVAKYTINPAIANGFSQFIGSVEVGKLADLVLWKPSFFGAKPEMVIKGGAIAWANMGDPNASIPTPEPVMMRPMFAAFGKAASSHSIAFVSKAALEDGVKASYSLSKRVEAVANVRKLTKLDMKLNDTLPRITVDPETYTVTADDEVLTCDPASSVPLSRNYFLF 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1299 852 CDD Urease_gamma 5 100 IPR002026 GO:0016151|GO:0043419
Lele21g1299 852 FunFam Urease subunit alpha 4 124 - -
Lele21g1299 852 CDD Urease_beta 132 231 IPR002019 GO:0035550|GO:0043419
Lele21g1299 852 SUPERFAMILY Metallo-dependent hydrolases 399 852 IPR032466 -
Lele21g1299 852 PANTHER UREASE 1 852 - -
Lele21g1299 852 CDD Urease_alpha 270 851 IPR005848 GO:0006807|GO:0009039|GO:0016151
Lele21g1299 852 Gene3D - 399 833 - -
Lele21g1299 852 TIGRFAM urease_alph: urease, alpha subunit 270 852 IPR005848 GO:0006807|GO:0009039|GO:0016151
Lele21g1299 852 Gene3D Urease, beta subunit 149 268 IPR036461 -
Lele21g1299 852 Pfam Urease subunit beta-alpha linker domain 231 264 IPR040881 -
Lele21g1299 852 SUPERFAMILY Urease, beta-subunit 132 260 IPR036461 -
Lele21g1299 852 ProSitePatterns Urease nickel ligands signature. 397 410 IPR029754 GO:0016151
Lele21g1299 852 Gene3D Urease, subunit C, domain 1 269 765 IPR011059 GO:0016810
Lele21g1299 852 Hamap Urease subunit alpha [ureC]. 269 852 IPR005848 GO:0006807|GO:0009039|GO:0016151
Lele21g1299 852 SUPERFAMILY Composite domain of metallo-dependent hydrolases 270 447 IPR011059 GO:0016810
Lele21g1299 852 SUPERFAMILY Composite domain of metallo-dependent hydrolases 694 763 IPR011059 GO:0016810
Lele21g1299 852 Gene3D - 4 124 IPR036463 GO:0016151|GO:0043419
Lele21g1299 852 PRINTS Urea amidohydrolase (urease) protein signature 712 725 IPR005848 GO:0006807|GO:0009039|GO:0016151
Lele21g1299 852 PRINTS Urea amidohydrolase (urease) protein signature 579 596 IPR005848 GO:0006807|GO:0009039|GO:0016151
Lele21g1299 852 PRINTS Urea amidohydrolase (urease) protein signature 618 634 IPR005848 GO:0006807|GO:0009039|GO:0016151
Lele21g1299 852 PRINTS Urea amidohydrolase (urease) protein signature 686 701 IPR005848 GO:0006807|GO:0009039|GO:0016151
Lele21g1299 852 TIGRFAM urease_gam: urease, gamma subunit 1 101 IPR002026 GO:0016151|GO:0043419
Lele21g1299 852 Pfam Urease, gamma subunit 1 100 IPR002026 GO:0016151|GO:0043419
Lele21g1299 852 PIRSF Urease 1 852 IPR008221 GO:0006807|GO:0009039|GO:0016151
Lele21g1299 852 FunFam Urease 149 267 - -
Lele21g1299 852 Pfam Urease beta subunit 133 228 IPR002019 GO:0035550|GO:0043419
Lele21g1299 852 TIGRFAM urease_beta: urease, beta subunit 132 232 IPR002019 GO:0035550|GO:0043419
Lele21g1299 852 ProSiteProfiles Urease domain profile. 399 852 IPR017951 GO:0006807|GO:0009039|GO:0016151
Lele21g1299 852 SUPERFAMILY Urease, gamma-subunit 1 104 IPR036463 GO:0016151|GO:0043419
Lele21g1299 852 Pfam Amidohydrolase family 395 736 IPR006680 GO:0016787
Lele21g1299 852 Pfam Urease alpha-subunit, N-terminal domain 270 389 IPR011612 -
Lele21g1299 852 ProSitePatterns Urease active site. 601 617 IPR017950 GO:0009039
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1299 Lele-ChrLele21 21125570 21143617 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1299 21 21125570 21143617 Lele21g1299 21 21125570 21143617 ECH
Lele21g1299 21 21125570 21143617 Lele23g0733 23 5896544 5913354 hybridization