Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03117 ATGCTGCAATCAGAAAGATCGCTTCGTAGCAACCTTCCAATAATTCGAATACCAGGAGATGGTAGATGTATGTTTAGATCTGTGGTGTATGGTGCCTGCCTCAGAACTGGGGACCCACCTCCAAGTCTCACCAGACAAAAAGAACTTGCAGATGAACTAAGAGCCAAAGTTGTGGATGAATTCATCAAGAGGAGAGCAGACACTGAGTGGTTTCTTGAAGGTGACTTTAACACCTATACAGTACAAATGAGAAAGTCTCAAGTATGGGGAGGAGAACCTGAACTTCTCATGTCATCACATGTTTTACAGATGCCTATAACTGTGATCATGCATGATACAAATTCCAATAACCTTAAAATTATAGCTGAATATGGTCAGGTGTATGGGAAGGAGAAGCCTATTAGAGTCATCTATGATGGTTTTGGACATTATGATGTATTGAAGTGTTCGACATGA 456 0.4079 MLQSERSLRSNLPIIRIPGDGRCMFRSVVYGACLRTGDPPPSLTRQKELADELRAKVVDEFIKRRADTEWFLEGDFNTYTVQMRKSQVWGGEPELLMSSHVLQMPITVIMHDTNSNNLKIIAEYGQVYGKEKPIRVIYDGFGHYDVLKCST 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03117 151 FunFam OTU domain-containing protein 2 151 - -
Trre5g03117 151 ProSiteProfiles OTU domain profile. 12 150 IPR003323 -
Trre5g03117 151 Pfam OTU-like cysteine protease 18 144 IPR003323 -
Trre5g03117 151 SUPERFAMILY Cysteine proteinases 10 147 IPR038765 -
Trre5g03117 151 CDD OTU_plant_OTU4-like 11 147 - -
Trre5g03117 151 Gene3D - 2 151 - -
Trre5g03117 151 PANTHER HIV-INDUCED PROTEIN-7-LIKE PROTEASE 16 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03117 Trre-Chr5 26511900 26513638 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03117 K18342 - gmx:100792132 255.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03117 5 26511900 26513638 Trre5g03117 5 26511900 26513638 ECH