Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01907 ATGATGGTTCTGGCAAATTCTGGTTCGGGCCTTCGGAAACAGGTTTTTCCCGTCGACTACGAAACCGAGGTATCGCAGCGTCTTGTCGACGCTGCTCATTACGGCGACACCGACGCTGCGTTTGATTGTGTCGCCAATCCCTCTGTCGACGTTAACTTCTTCGGAACGGTGTCGTTTAAGTCCAAAACGACGGAGATCGTGCTGCAGGACGAGTCGCCTCACCGAGTTAGCACGGCGTACGAGGAGTTCAAGACCGAGCTCACCGCTCTGTTCCTGGCCGCGCACACGGGGAATTTGACACTCATTCGGAAGCTTCTGAATGTTGGAGCTAATGTAAATATGAGAATGTTCCGGGGCTATGCCACAACAGCATCGGTGAGAGAAGGGCATCTAAAAGTGTTGGAGGTCCTTATCAATGCTGGGGCATCACAACATGCATGCGAGGAGGCTTTAATGGAAGCAAGCTATATGGGGAGGGCGAGATTTGCTGAACTACTCATGCAGTCCAACATGATTCGTCCTCAAATTGCAGTTCATGCCCTTGTCTCTGCCTGTTGCAGAGGCTTCGTTGAGGTTGTTGATGTACTCATCAAGCAAGGAGTGGATGCCGATGCAATTGATAGGACTTTGCTTCAATCTTCAAAGCCATTTCTTCATGCTAATGTTGATTGCAATGCATTATTTGCTGCTGTGGTCAGCAGGCAGATTAATGTTGTTAGATTACTGTTGCAGGTTGGCGTTGGGCTTGATATGAAGGTCAAAGTGGGGGCTTGGTCGTGGGACAGAGACACAGGAGAAGAATTTCGAGTAGGTGTTGGACTAGCTGAGGCTTATCCAATCACCTGGTGTGCTGTGGAGTATTTTGAATCCACTGGTGCTATATTGCATATGTTGCTCCGCCATCTCTCGCCTAATAGCTTACACATTGGGAGGAGTCTATTGCACCATGCTATCATTTGTAACAATGAAAAAGCAGTACATATACTTCTAAACAATGGTGCTGATGCAGAACTGATTGTGCAAACCACCGAAGAAACCAATGAACACCCAATTCACATTGCTGCACGGCTTGGATCATGCAACATTCTTCAGAACCTGATTAATGGTGGTTGTAACTTGGATTCCCAATCAAAATGTGGAGATACAGCATTGATGATCTGCACAAGGCACAAACATGAGAAGTGCCTTGGGGTCCTAGCATCAGCAGGTGCTGATTTGGGAATGGTAAATTCATCTGGTCACTGTGCAACTTCAATTGCACACCTTGTTCAGTGGACTAAAGTCTACCAGAAAGCAATCTTGGATGTAATCAGATCCGGGAAGGTTGTTAAATCAAGCAATGCCGCTAGATTCTCCCCTTTGTTATTAGTAACTCGTGCAAATGACATAGAGGGTTTGAAGAAACTCATCGAAAATGGGAACATCAATCTGAATGAGCAAAATGCTAATGGTTTTTCTGCTGCTATGGTAGCTGCCGTGGGGGGATACGTGGAGGCTTTCAAGTTGCTTCTTTATGCAGGGGCTGACGTTACTAAGCTTAAAAACAGATATGGTTTAACAGTACTGAACCTCATAGACTTGAGCCAAAATGGTGAACTGTTCCACAAGGTGATGCTCGAATATGCACTTAAAAGGGGAGGCAATGGTTCAATTGATGGAAACCCTCTCCACCGTGCAGCTTGCTACGGAGACATAAACATTGTGCACAAACTACTAAAAGAAGGGTATGAAGTAAATGCTTTTGATGGTCAAGGATATACCCCTTTGATGTTAGCAGCAAGAGGATGCCGTGGTGAAATGTGTGCGCTTTTGATCTCATACGGAGCTAAATGTGATATTCAGAATGAGAGACATGAGACAGCCCTTTCACTTTCCAGAGAAAATGGTTCAGGAAATGATGCTGAACGTGTGATTTTGGATGAGCTAGGTAGAAGACTAGTCTTGTGTGGAGCTCGTGTGAAGAAGCATACAAAGTGTGGCAAAGGTTCACCTCATGGTAAGTCACTAGTGATGATTGGTGCTGTTGGAATCTTACGTTGGGGAAAATCAAGTAAGAGAAATGTGATTTGTAAAGAGGCTGAGGTTGGACCTAGTGTGAAATTTCGATCGAATCGTAGGAGGAAGTTGGATGTGGATGAACCGGGAATGTTCCATGTAATTACAACAAAGAATAAGCAGGTACATTTTGTGTGTGAAGGTGGGGTTCAGATGGCTGACTTGTGGGTAAGAGGGATTAAATTAGTAACCAGAGAAGCCATTCTTGGTAGAAGAGCTCATGACGTTTGA 2286 0.4528 MMVLANSGSGLRKQVFPVDYETEVSQRLVDAAHYGDTDAAFDCVANPSVDVNFFGTVSFKSKTTEIVLQDESPHRVSTAYEEFKTELTALFLAAHTGNLTLIRKLLNVGANVNMRMFRGYATTASVREGHLKVLEVLINAGASQHACEEALMEASYMGRARFAELLMQSNMIRPQIAVHALVSACCRGFVEVVDVLIKQGVDADAIDRTLLQSSKPFLHANVDCNALFAAVVSRQINVVRLLLQVGVGLDMKVKVGAWSWDRDTGEEFRVGVGLAEAYPITWCAVEYFESTGAILHMLLRHLSPNSLHIGRSLLHHAIICNNEKAVHILLNNGADAELIVQTTEETNEHPIHIAARLGSCNILQNLINGGCNLDSQSKCGDTALMICTRHKHEKCLGVLASAGADLGMVNSSGHCATSIAHLVQWTKVYQKAILDVIRSGKVVKSSNAARFSPLLLVTRANDIEGLKKLIENGNINLNEQNANGFSAAMVAAVGGYVEAFKLLLYAGADVTKLKNRYGLTVLNLIDLSQNGELFHKVMLEYALKRGGNGSIDGNPLHRAACYGDINIVHKLLKEGYEVNAFDGQGYTPLMLAARGCRGEMCALLISYGAKCDIQNERHETALSLSRENGSGNDAERVILDELGRRLVLCGARVKKHTKCGKGSPHGKSLVMIGAVGILRWGKSSKRNVICKEAEVGPSVKFRSNRRRKLDVDEPGMFHVITTKNKQVHFVCEGGVQMADLWVRGIKLVTREAILGRRAHDV 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01907 761 Coils Coil 463 483 - -
Spst1g01907 761 Pfam Ankyrin repeats (3 copies) 346 408 IPR002110 GO:0005515
Spst1g01907 761 Pfam Ankyrin repeats (3 copies) 538 615 IPR002110 GO:0005515
Spst1g01907 761 Gene3D - 304 429 IPR036770 -
Spst1g01907 761 Gene3D - 540 642 IPR036770 -
Spst1g01907 761 Gene3D - 430 539 IPR036770 -
Spst1g01907 761 ProSiteProfiles Ankyrin repeat profile. 584 616 IPR002110 GO:0005515
Spst1g01907 761 ProSiteProfiles Ankyrin repeat profile. 551 583 IPR002110 GO:0005515
Spst1g01907 761 ProSiteProfiles Ankyrin repeat region circular profile. 483 510 - -
Spst1g01907 761 ProSiteProfiles Ankyrin repeat region circular profile. 309 335 - -
Spst1g01907 761 PANTHER ANKYRIN REPEAT-CONTAINING 22 742 - -
Spst1g01907 761 SUPERFAMILY Ankyrin repeat 310 637 IPR036770 -
Spst1g01907 761 ProSiteProfiles Ankyrin repeat region circular profile. 551 582 - -
Spst1g01907 761 ProSiteProfiles Ankyrin repeat profile. 85 117 IPR002110 GO:0005515
Spst1g01907 761 Gene3D - 17 175 IPR036770 -
Spst1g01907 761 ProSiteProfiles Ankyrin repeat profile. 346 378 IPR002110 GO:0005515
Spst1g01907 761 SMART ANK_2a 346 375 IPR002110 GO:0005515
Spst1g01907 761 SMART ANK_2a 309 338 IPR002110 GO:0005515
Spst1g01907 761 SMART ANK_2a 85 114 IPR002110 GO:0005515
Spst1g01907 761 SMART ANK_2a 551 580 IPR002110 GO:0005515
Spst1g01907 761 SMART ANK_2a 117 146 IPR002110 GO:0005515
Spst1g01907 761 SMART ANK_2a 379 408 IPR002110 GO:0005515
Spst1g01907 761 SMART ANK_2a 449 479 IPR002110 GO:0005515
Spst1g01907 761 SMART ANK_2a 584 613 IPR002110 GO:0005515
Spst1g01907 761 SMART ANK_2a 222 251 IPR002110 GO:0005515
Spst1g01907 761 SMART ANK_2a 176 205 IPR002110 GO:0005515
Spst1g01907 761 SMART ANK_2a 483 512 IPR002110 GO:0005515
Spst1g01907 761 ProSiteProfiles Ankyrin repeat profile. 483 515 IPR002110 GO:0005515
Spst1g01907 761 SUPERFAMILY Ankyrin repeat 28 252 IPR036770 -
Spst1g01907 761 ProSiteProfiles Ankyrin repeat region circular profile. 85 115 - -
Spst1g01907 761 ProSiteProfiles Ankyrin repeat region circular profile. 584 616 - -
Spst1g01907 761 ProSiteProfiles Ankyrin repeat profile. 309 341 IPR002110 GO:0005515
Spst1g01907 761 Gene3D - 176 263 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01907 Spst-Chr1 27328848 27333645 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01907 - - gmx:100795638 1353.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01907 1 27328848 27333645 Spst1g01907 1 27328848 27333645 ECH