Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre5g03120 | ATGAAACTGTGTCAAAGAGAAATCGAAAAACTAGTGCTGCACAATGCTGGCTATCTTGCTCAGAAACGTCTCGCTCGTGGTTTGAAACTCAACTCTACTGAAGCTCTTGCTCTCATAGCAACACAGATTGTGGAATTTGTTCGCGATGGCAATAAGACTGTTGCAGAGCTAATGTCTATTGGAAGAGAGCTATTAGGAAGGAGACAAGTTCTTTCGGCTGTTCTGCATCTCTTGGAAACTGTTCAGGTTGAAGCTACCTTTCATGATGGGACTAAGTTAATCACGGTTCATAACCCAATTGCTCGTGAAAATGGAAACCTTGAACTAGCATTATTTGGTTCTTTTCTTCCAGTACCTTCACTTGACATGTTTATTGAGAACAAAGATGATAGTATCATTCCTGGTGAGCTAAAATCTCAAGATGGAAACCTGATTCTTAACGCCGGAAGGGAGGCAGTCTCTCTTAAAGTTGTAAACAATGGAGACAGGCCAATTCAGGTTGGAAGCCACTATCATTTTATTGAAGTAAATCCTCACTTAATCTTTGATCGAAGAAAAGCATTTGGCAAGCGCCTAAATATAGCGTCTGGGACTACCACACGCTTTGAGCCAGGGGAAAGTAAAAGTGTTGTACTTGTAAGCGTTGGAGGTAACAAAGTCATCCGAGGAGGTAACAACATTGTCGATGGTCCAGTTAACGATTCCAATTGCATAGCAGCCATGGAAACTGTGACAACAAGGAGGTTCGGGCATAAAGACGATGAAAATGCAAGGGAAGGTATTACTGGAGAAGACTATTCATTGACTAAATTAATTCCTCGAGAGGAATATACTAACAAGTATGGCCCCACTGTTGGTGACAAAATTCGTCTTGGTGACACTAACTTGTTTGCGGAAATTGAAAAAGATTATGCTGTCTATGGTGATGAATGTGTTTTTGGAGGTGGGAAGACTATAAGAGATGGAATGGGTCAGTCGTGTGGCCATCATCCTGATCACTCCTTGGATACTGTTATAACAAATGCAGTAATCATCGATTACACCGGAATTTACAAAGCAGATATTGGTATTAAAGATGGCCTCATTGCCTCAATTGGAAAAGCAGGAAATCCAGACGTTATGAATGGCGTACTTGATAATATGATCATTGGGGCTAATACTGAAGTTATTTCTGGAGAGGGCTTTATTGTAACAGCTGGGGCTATAGATTGTCATGTGCATTTTATATGCCCTCAATTAGTATATGAAGCCGTATCAAGTGGGATTACAACATTAGTGGGAGGAGGAACCGGACCAGCATATGGAACGCGTGCTACAACTTGTACACCAGCACCGATTCAGATGCAAATGATGCTGCAATCAACAGATGAGCTGCCTCTGAACTTCGGTTTTAATGGAAAAGGGAATTGTTCCAAGCCTGATGAATTACATGAAATAGTCAAGGCCGGAGCTATGGGACTGAAGCTGCATGAGGATTGGGGAACTACACCAGCCGCAATAGACAACTGTTTGACTGTTAACATACATACTGACACCTTAAATGAATCTGGATTTGTGGAACATACTATTGCTGCATTTAAAGGAAGAACTATTCATACTTACCACAGTGAAGGTGCAGGTGGAGGCCATGCTCCAGATATCATCAAAGTATGTGGTGTGAAGAATGTCTTACCCTCGTCCACAAATCCTACGCGCCCTTTTACATCAAATACCATAGATGAGCATCTTGACATGTTGATGGTCTGCCATCATCTTGATAAGAATATTCCAGAAGATGTTGCTTTTGCAGAATCGAGGATAAGAGCCGAAACAATTGCTGCTGAAGATATTTTGCATGATATGGGTGCCATTAGCATTATATCTTCTGATTCACAGGCTATGGGTAGAATTGGAGAGGTGATAAGCAGAACTTGGCAAACTGCCAATAAGATGAAGTCACAAAGAGGACCTCTGCAGCCTGGTGATTCAGACAATGACAACTTTCGAATCAAACGTTATATTGCAAAGTACACTATAAATCCAGCTATAGCGAATGGTTTGTCGCGATATATTGGTTCAGTTGAGGTGGGAAAGTTAGCTGATCTTGTATTATGGCAACCGGCTTTTTTTGGAGCAAAACCGGAAATGGTGATCAAAGGCGGTGACATTGCATGGGCTTTAATGGGTGACCCAAACGCTAGCATCCCAACACCTGAACCGGTGATTATGAGACCTATGTTTGGAGCATTTGGCAAAGCTGGCAGTGCGAACTCTATTGCTTTTGTGAGCAAGGCAGCTTTGGACTACGGTGTAAAAGCTTTATATGGACTTAACAAACGGGTGAAAGCCGTGGACAATGTGAGGAATCTCACTAAACTAGACATGAAACTGAATGACGCGCTTCCAGAAATCACCGTGGACCCGGAGACATACACAGTAACTGCAGATGGAGAGGTTCTATCCTGTACTGCAGCCACTACTGTTCCTCTTTCTCGAAATTACTTCCTCTTCTAA | 2493 | 0.422 | MKLCQREIEKLVLHNAGYLAQKRLARGLKLNSTEALALIATQIVEFVRDGNKTVAELMSIGRELLGRRQVLSAVLHLLETVQVEATFHDGTKLITVHNPIARENGNLELALFGSFLPVPSLDMFIENKDDSIIPGELKSQDGNLILNAGREAVSLKVVNNGDRPIQVGSHYHFIEVNPHLIFDRRKAFGKRLNIASGTTTRFEPGESKSVVLVSVGGNKVIRGGNNIVDGPVNDSNCIAAMETVTTRRFGHKDDENAREGITGEDYSLTKLIPREEYTNKYGPTVGDKIRLGDTNLFAEIEKDYAVYGDECVFGGGKTIRDGMGQSCGHHPDHSLDTVITNAVIIDYTGIYKADIGIKDGLIASIGKAGNPDVMNGVLDNMIIGANTEVISGEGFIVTAGAIDCHVHFICPQLVYEAVSSGITTLVGGGTGPAYGTRATTCTPAPIQMQMMLQSTDELPLNFGFNGKGNCSKPDELHEIVKAGAMGLKLHEDWGTTPAAIDNCLTVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGVKNVLPSSTNPTRPFTSNTIDEHLDMLMVCHHLDKNIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTANKMKSQRGPLQPGDSDNDNFRIKRYIAKYTINPAIANGLSRYIGSVEVGKLADLVLWQPAFFGAKPEMVIKGGDIAWALMGDPNASIPTPEPVIMRPMFGAFGKAGSANSIAFVSKAALDYGVKALYGLNKRVKAVDNVRNLTKLDMKLNDALPEITVDPETYTVTADGEVLSCTAATTVPLSRNYFLF | 830 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre5g03120 | 830 | CDD | Urease_gamma | 5 | 100 | IPR002026 | GO:0016151|GO:0043419 | |
| Trre5g03120 | 830 | PANTHER | UREASE | 1 | 830 | - | - | |
| Trre5g03120 | 830 | NCBIfam | urease subunit alpha | 272 | 830 | IPR005848 | GO:0006807|GO:0009039|GO:0016151 | |
| Trre5g03120 | 830 | NCBIfam | urease subunit gamma | 1 | 101 | IPR002026 | GO:0016151|GO:0043419 | |
| Trre5g03120 | 830 | Pfam | Urease subunit beta-alpha linker domain | 232 | 265 | IPR040881 | - | |
| Trre5g03120 | 830 | Hamap | Urease subunit alpha [ureC]. | 270 | 830 | IPR005848 | GO:0006807|GO:0009039|GO:0016151 | |
| Trre5g03120 | 830 | CDD | Urease_alpha | 272 | 829 | IPR005848 | GO:0006807|GO:0009039|GO:0016151 | |
| Trre5g03120 | 830 | ProSitePatterns | Urease nickel ligands signature. | 398 | 411 | IPR029754 | GO:0016151 | |
| Trre5g03120 | 830 | Gene3D | Urease, beta subunit | 150 | 269 | IPR036461 | - | |
| Trre5g03120 | 830 | Gene3D | - | 4 | 124 | IPR036463 | GO:0016151|GO:0043419 | |
| Trre5g03120 | 830 | ProSiteProfiles | Urease domain profile. | 400 | 830 | IPR017951 | GO:0006807|GO:0009039|GO:0016151 | |
| Trre5g03120 | 830 | Pfam | Urease, gamma subunit | 1 | 100 | IPR002026 | GO:0016151|GO:0043419 | |
| Trre5g03120 | 830 | PIRSF | Urease | 1 | 830 | IPR008221 | GO:0006807|GO:0009039|GO:0016151 | |
| Trre5g03120 | 830 | Hamap | Urease subunit beta [ureB]. | 132 | 232 | IPR002019 | GO:0035550|GO:0043419 | |
| Trre5g03120 | 830 | Pfam | Urease beta subunit | 134 | 230 | IPR002019 | GO:0035550|GO:0043419 | |
| Trre5g03120 | 830 | PRINTS | Urea amidohydrolase (urease) protein signature | 664 | 679 | IPR005848 | GO:0006807|GO:0009039|GO:0016151 | |
| Trre5g03120 | 830 | PRINTS | Urea amidohydrolase (urease) protein signature | 690 | 703 | IPR005848 | GO:0006807|GO:0009039|GO:0016151 | |
| Trre5g03120 | 830 | PRINTS | Urea amidohydrolase (urease) protein signature | 597 | 613 | IPR005848 | GO:0006807|GO:0009039|GO:0016151 | |
| Trre5g03120 | 830 | PRINTS | Urea amidohydrolase (urease) protein signature | 558 | 575 | IPR005848 | GO:0006807|GO:0009039|GO:0016151 | |
| Trre5g03120 | 830 | CDD | Urease_beta | 132 | 232 | IPR002019 | GO:0035550|GO:0043419 | |
| Trre5g03120 | 830 | Gene3D | - | 400 | 811 | - | - | |
| Trre5g03120 | 830 | SUPERFAMILY | Composite domain of metallo-dependent hydrolases | 271 | 448 | IPR011059 | GO:0016810 | |
| Trre5g03120 | 830 | FunFam | Urease subunit alpha | 4 | 124 | - | - | |
| Trre5g03120 | 830 | Pfam | Amidohydrolase family | 396 | 713 | IPR006680 | GO:0016787 | |
| Trre5g03120 | 830 | SUPERFAMILY | Composite domain of metallo-dependent hydrolases | 672 | 742 | IPR011059 | GO:0016810 | |
| Trre5g03120 | 830 | NCBIfam | urease subunit beta | 132 | 233 | IPR002019 | GO:0035550|GO:0043419 | |
| Trre5g03120 | 830 | ProSitePatterns | Urease active site. | 580 | 596 | IPR017950 | GO:0009039 | |
| Trre5g03120 | 830 | Pfam | Urease alpha-subunit, N-terminal domain | 272 | 390 | IPR011612 | - | |
| Trre5g03120 | 830 | Gene3D | Urease, subunit C, domain 1 | 270 | 743 | IPR011059 | GO:0016810 | |
| Trre5g03120 | 830 | SUPERFAMILY | Urease, gamma-subunit | 1 | 104 | IPR036463 | GO:0016151|GO:0043419 | |
| Trre5g03120 | 830 | SUPERFAMILY | Metallo-dependent hydrolases | 401 | 830 | IPR032466 | - | |
| Trre5g03120 | 830 | SUPERFAMILY | Urease, beta-subunit | 132 | 261 | IPR036461 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre5g03120 | Trre-Chr5 | 26523753 | 26529652 | Tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre5g03120 | K01427 | - | gmx:547672 | 1407.89 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Trre5g03120 | 5 | 26523753 | 26529652 | Trre5g03120 | 5 | 26523753 | 26529652 | ECH |